* using log directory 'd:/RCompile/CRANincoming/R-devel/MEAanalysis.Rcheck' * using R Under development (unstable) (2025-04-26 r88181 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'MEAanalysis/DESCRIPTION' ... OK * this is package 'MEAanalysis' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Emily Gordon ' New submission Possibly misspelled words in DESCRIPTION: AxIS (4:48) Axion (5:19, 12:50) BioSystems (5:25, 12:56) MEA (13:71) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MEAanalysis' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s] NOTE MEA_heatmap: no visible binding for global variable 'Well' MEA_heatmap: no visible binding for global variable 'variable' MEA_heatmap: no visible binding for global variable 'value' MEA_heatmap: no visible binding for global variable 'experimental_condition' MEA_heatmap: no visible binding for global variable 'synchrony_index' create_electrode_dataset: no visible binding for global variable 'Electrode' create_electrode_dataset: no visible global function definition for ':=' create_electrode_dataset: no visible binding for global variable '.SD' create_electrode_dataset: no visible binding for global variable 'Recording_identifier' create_electrode_dataset: no visible binding for global variable 'well' create_synchrony_dataset: no visible binding for global variable 'X1' create_synchrony_dataset: no visible binding for global variable '...1' create_synchrony_dataset: no visible binding for global variable 'Well' electrode_burst_duration: no visible binding for global variable 'output_table' electrode_burst_duration: no visible binding for global variable '.' electrode_burst_duration: no visible binding for global variable 'Time_s' electrode_burst_duration: no visible binding for global variable 'Recording_identifier' electrode_burst_duration: no visible binding for global variable 'Electrode' electrode_burst_duration: no visible binding for global variable 'Duration_s' electrode_burst_duration: no visible binding for global variable 'Size_spikes' electrode_burst_duration: no visible binding for global variable 'duration_raw' electrode_burst_duration: no visible binding for global variable 'duration_mean' electrode_burst_duration: no visible binding for global variable 'duration_sd' electrode_burst_duration: no visible binding for global variable 'duration_se' electrode_mean_burst_ISI: no visible binding for global variable 'output_table' electrode_mean_burst_ISI: no visible binding for global variable '.' electrode_mean_burst_ISI: no visible binding for global variable 'Time_s' electrode_mean_burst_ISI: no visible binding for global variable 'Recording_identifier' electrode_mean_burst_ISI: no visible binding for global variable 'Duration_s' electrode_mean_burst_ISI: no visible binding for global variable 'Size_spikes' electrode_mean_burst_ISI: no visible binding for global variable 'Electrode' electrode_mean_burst_ISI: no visible binding for global variable 'mean_burst_ISI_s' electrode_mean_burst_ISI: no visible binding for global variable 'avg_mean_burst_ISI' electrode_mean_burst_ISI: no visible binding for global variable 'sd_mean_burst_ISI' electrode_mean_burst_ISI: no visible binding for global variable 'se_mean_burst_ISI' electrode_number_of_bursts: no visible binding for global variable 'output_table' electrode_number_of_bursts: no visible binding for global variable '.' electrode_number_of_bursts: no visible binding for global variable 'Time_s' electrode_number_of_bursts: no visible binding for global variable 'Recording_identifier' electrode_number_of_bursts: no visible binding for global variable 'Electrode' electrode_number_of_bursts: no visible binding for global variable 'burst_count' electrode_spikes_per_burst: no visible binding for global variable 'output_table' electrode_spikes_per_burst: no visible binding for global variable '.' electrode_spikes_per_burst: no visible binding for global variable 'Time_s' electrode_spikes_per_burst: no visible binding for global variable 'Recording_identifier' electrode_spikes_per_burst: no visible binding for global variable 'Electrode' electrode_spikes_per_burst: no visible binding for global variable 'Size_spikes' electrode_spikes_per_burst: no visible binding for global variable 'Duration_s' electrode_spikes_per_burst: no visible binding for global variable 'spikes_raw' electrode_spikes_per_burst: no visible binding for global variable 'spikes_mean' electrode_spikes_per_burst: no visible binding for global variable 'spikes_sd' electrode_spikes_per_burst: no visible binding for global variable 'spikes_se' single_electrode_barchart: no visible binding for global variable 'output_table' single_electrode_barchart: no visible binding for global variable 'se' single_electrode_barchart: no visible binding for global variable 'Time_s' single_electrode_barchart: no visible binding for global variable 'Duration_s' single_electrode_barchart: no visible binding for global variable 'Size_spikes' single_electrode_barchart: no visible binding for global variable 'Recording_identifier' single_electrode_barchart: no visible binding for global variable '.' single_electrode_barchart: no visible binding for global variable 'Electrode' single_electrode_barchart: no visible binding for global variable 'variable' single_electrode_barchart: no visible binding for global variable 'recording_time' single_electrode_barchart: no visible binding for global variable 'parameter' single_electrode_barchart: no visible binding for global variable 'value' well_barchart: no visible binding for global variable 'output_table' well_barchart: no visible binding for global variable 'se' well_barchart: no visible binding for global variable 'Time_s' well_barchart: no visible binding for global variable 'Duration_s' well_barchart: no visible binding for global variable 'Size_spikes' well_barchart: no visible binding for global variable 'Recording_identifier' well_barchart: no visible binding for global variable '.' well_barchart: no visible binding for global variable 'well' well_barchart: no visible binding for global variable 'variable' well_barchart: no visible binding for global variable 'parameter' well_barchart: no visible binding for global variable 'recording_time' well_barchart: no visible binding for global variable 'value' well_burst_duration: no visible binding for global variable 'output_table' well_burst_duration: no visible binding for global variable '.' well_burst_duration: no visible binding for global variable 'Time_s' well_burst_duration: no visible binding for global variable 'Recording_identifier' well_burst_duration: no visible binding for global variable 'well' well_burst_duration: no visible binding for global variable 'Duration_s' well_burst_duration: no visible binding for global variable 'Electrode' well_burst_duration: no visible binding for global variable 'Size_spikes' well_burst_duration: no visible binding for global variable 'well_duration_raw' well_burst_duration: no visible binding for global variable 'well_duration_mean' well_burst_duration: no visible binding for global variable 'well_duration_sd' well_burst_duration: no visible binding for global variable 'well_duration_se' well_mean_burst_ISI: no visible binding for global variable 'output_table' well_mean_burst_ISI: no visible binding for global variable '.' well_mean_burst_ISI: no visible binding for global variable 'Time_s' well_mean_burst_ISI: no visible binding for global variable 'Recording_identifier' well_mean_burst_ISI: no visible binding for global variable 'Duration_s' well_mean_burst_ISI: no visible binding for global variable 'Size_spikes' well_mean_burst_ISI: no visible binding for global variable 'well' well_mean_burst_ISI: no visible binding for global variable 'mean_burst_ISI_s' well_mean_burst_ISI: no visible binding for global variable 'Electrode' well_mean_burst_ISI: no visible binding for global variable 'well_avg_mean_burst_ISI' well_mean_burst_ISI: no visible binding for global variable 'well_sd_mean_burst_ISI' well_mean_burst_ISI: no visible binding for global variable 'well_se_mean_burst_ISI' well_number_of_bursts: no visible binding for global variable 'output_table' well_number_of_bursts: no visible binding for global variable 'Electrode' well_number_of_bursts: no visible binding for global variable 'Recording_identifier' well_number_of_bursts: no visible binding for global variable 'well' well_number_of_bursts: no visible binding for global variable '.' well_number_of_bursts: no visible binding for global variable 'Time_s' well_number_of_bursts: no visible binding for global variable 'electrode_burst_count' well_number_of_bursts: no visible binding for global variable 'well_burst_count_mean' well_number_of_bursts: no visible binding for global variable 'well_burst_count_sd' well_number_of_bursts: no visible binding for global variable 'well_burst_count_se' well_spikes_per_burst: no visible binding for global variable 'output_table' well_spikes_per_burst: no visible binding for global variable '.' well_spikes_per_burst: no visible binding for global variable 'Time_s' well_spikes_per_burst: no visible binding for global variable 'Recording_identifier' well_spikes_per_burst: no visible binding for global variable 'well' well_spikes_per_burst: no visible binding for global variable 'Size_spikes' well_spikes_per_burst: no visible binding for global variable 'Electrode' well_spikes_per_burst: no visible binding for global variable 'Duration_s' well_spikes_per_burst: no visible binding for global variable 'well_spikes_raw' well_spikes_per_burst: no visible binding for global variable 'well_spikes_mean' well_spikes_per_burst: no visible binding for global variable 'well_spikes_sd' well_spikes_per_burst: no visible binding for global variable 'well_spikes_se' Undefined global functions or variables: . ...1 .SD := Duration_s Electrode Recording_identifier Size_spikes Time_s Well X1 avg_mean_burst_ISI burst_count duration_mean duration_raw duration_sd duration_se electrode_burst_count experimental_condition mean_burst_ISI_s output_table parameter recording_time sd_mean_burst_ISI se se_mean_burst_ISI spikes_mean spikes_raw spikes_sd spikes_se synchrony_index value variable well well_avg_mean_burst_ISI well_burst_count_mean well_burst_count_sd well_burst_count_se well_duration_mean well_duration_raw well_duration_sd well_duration_se well_sd_mean_burst_ISI well_se_mean_burst_ISI well_spikes_mean well_spikes_raw well_spikes_sd well_spikes_se * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'single_electrode_barchart.Rd': \usage lines wider than 90 characters: "A1_|A2_|A3_|A4_|A5_|A6_|B1_|B2_|B3_|B4_|B5_|B6_|C1_\n |C2_|C3_|C4_|C5_|C6_|D1_|D2_|D3_|D4_|D5_|D6 ... [TRUNCATED] These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK Running 'testthat.R' * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [13s] OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... OK * DONE Status: 3 NOTEs