* using log directory 'd:/RCompile/CRANincoming/R-devel/MEAanalysis.Rcheck'
* using R Under development (unstable) (2025-04-24 r88177 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'MEAanalysis/DESCRIPTION' ... OK
* this is package 'MEAanalysis' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Emily Gordon <emily.gordon@wadham.ox.ac.uk>'

New submission

Possibly misspelled words in DESCRIPTION:
  techinique (7:140)

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emily",
                    family = "Gordon",
                    role = c("aut", "cre"),
                    email = "emily.gordon@wadham.ox.ac.uk")
as necessary.

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... INFO
Depends: includes the non-default packages:
  'data.table', 'dplyr', 'ggplot2', 'janitor', 'kableExtra', 'knitr',
  'readr', 'readxl', 'reshape2', 'stringr', 'tidyr', 'tidyverse'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MEAanalysis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'doc'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'kableExtra' 'knitr' 'readxl' 'reshape2' 'tidyverse'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s] NOTE
MEA_heatmap: no visible binding for global variable 'Well'
MEA_heatmap: no visible global function definition for '%>%'
MEA_heatmap: no visible binding for global variable 'variable'
MEA_heatmap: no visible binding for global variable 'value'
MEA_heatmap: no visible global function definition for 'aes'
MEA_heatmap: no visible binding for global variable
  'experimental_condition'
MEA_heatmap: no visible binding for global variable 'synchrony_index'
MEA_heatmap: no visible global function definition for 'theme'
MEA_heatmap: no visible global function definition for 'element_text'
create_electrode_dataset: no visible global function definition for
  '%>%'
create_electrode_dataset: no visible global function definition for
  'read_xlsx'
create_electrode_dataset: no visible global function definition for
  'read_xls'
create_electrode_dataset: no visible binding for global variable
  'Electrode'
create_electrode_dataset: no visible global function definition for
  ':='
create_electrode_dataset: no visible binding for global variable '.SD'
create_electrode_dataset: no visible binding for global variable
  'Recording_identifier'
create_electrode_dataset: no visible binding for global variable 'well'
create_electrode_dataset: no visible global function definition for
  'str_sub'
create_synchrony_dataset: no visible binding for global variable 'X1'
create_synchrony_dataset: no visible global function definition for
  'read_excel'
create_synchrony_dataset: no visible binding for global variable '...1'
create_synchrony_dataset: no visible binding for global variable 'Well'
electrode_burst_duration: no visible binding for global variable
  'output_table'
electrode_burst_duration: no visible global function definition for
  '%>%'
electrode_burst_duration: no visible binding for global variable '.'
electrode_burst_duration: no visible binding for global variable
  'Time_s'
electrode_burst_duration: no visible binding for global variable
  'Recording_identifier'
electrode_burst_duration: no visible binding for global variable
  'Electrode'
electrode_burst_duration: no visible binding for global variable
  'Duration_s'
electrode_burst_duration: no visible global function definition for
  'sd'
electrode_burst_duration: no visible binding for global variable
  'Size_spikes'
electrode_burst_duration: no visible binding for global variable
  'duration_raw'
electrode_burst_duration: no visible binding for global variable
  'duration_mean'
electrode_burst_duration: no visible binding for global variable
  'duration_sd'
electrode_burst_duration: no visible binding for global variable
  'duration_se'
electrode_mean_burst_ISI: no visible binding for global variable
  'output_table'
electrode_mean_burst_ISI: no visible global function definition for
  '%>%'
electrode_mean_burst_ISI: no visible binding for global variable '.'
electrode_mean_burst_ISI: no visible binding for global variable
  'Time_s'
electrode_mean_burst_ISI: no visible binding for global variable
  'Recording_identifier'
electrode_mean_burst_ISI: no visible binding for global variable
  'Duration_s'
electrode_mean_burst_ISI: no visible binding for global variable
  'Size_spikes'
electrode_mean_burst_ISI: no visible binding for global variable
  'Electrode'
electrode_mean_burst_ISI: no visible binding for global variable
  'mean_burst_ISI_s'
electrode_mean_burst_ISI: no visible global function definition for
  'sd'
electrode_mean_burst_ISI: no visible binding for global variable
  'avg_mean_burst_ISI'
electrode_mean_burst_ISI: no visible binding for global variable
  'sd_mean_burst_ISI'
electrode_mean_burst_ISI: no visible binding for global variable
  'se_mean_burst_ISI'
electrode_number_of_bursts: no visible binding for global variable
  'output_table'
electrode_number_of_bursts: no visible global function definition for
  '%>%'
electrode_number_of_bursts: no visible binding for global variable '.'
electrode_number_of_bursts: no visible binding for global variable
  'Time_s'
electrode_number_of_bursts: no visible binding for global variable
  'Recording_identifier'
electrode_number_of_bursts: no visible binding for global variable
  'Electrode'
electrode_number_of_bursts: no visible global function definition for
  'add_count'
electrode_number_of_bursts: no visible binding for global variable
  'burst_count'
electrode_spikes_per_burst: no visible binding for global variable
  'output_table'
electrode_spikes_per_burst: no visible global function definition for
  '%>%'
electrode_spikes_per_burst: no visible binding for global variable '.'
electrode_spikes_per_burst: no visible binding for global variable
  'Time_s'
electrode_spikes_per_burst: no visible binding for global variable
  'Recording_identifier'
electrode_spikes_per_burst: no visible binding for global variable
  'Electrode'
electrode_spikes_per_burst: no visible binding for global variable
  'Size_spikes'
electrode_spikes_per_burst: no visible global function definition for
  'sd'
electrode_spikes_per_burst: no visible binding for global variable
  'Duration_s'
electrode_spikes_per_burst: no visible binding for global variable
  'spikes_raw'
electrode_spikes_per_burst: no visible binding for global variable
  'spikes_mean'
electrode_spikes_per_burst: no visible binding for global variable
  'spikes_sd'
electrode_spikes_per_burst: no visible binding for global variable
  'spikes_se'
single_electrode_barchart: no visible binding for global variable
  'output_table'
single_electrode_barchart: no visible binding for global variable 'se'
single_electrode_barchart: no visible global function definition for
  '%>%'
single_electrode_barchart: no visible binding for global variable
  'Time_s'
single_electrode_barchart: no visible binding for global variable
  'Duration_s'
single_electrode_barchart: no visible binding for global variable
  'Size_spikes'
single_electrode_barchart: no visible binding for global variable
  'Recording_identifier'
single_electrode_barchart: no visible binding for global variable '.'
single_electrode_barchart: no visible binding for global variable
  'Electrode'
single_electrode_barchart: no visible binding for global variable
  'variable'
single_electrode_barchart: no visible binding for global variable
  'recording_time'
single_electrode_barchart: no visible binding for global variable
  'parameter'
single_electrode_barchart: no visible binding for global variable
  'value'
single_electrode_barchart: no visible global function definition for
  'ungroup'
single_electrode_barchart: no visible global function definition for
  'aes'
single_electrode_barchart: no visible global function definition for
  'position_dodge'
single_electrode_barchart: no visible global function definition for
  'position_jitterdodge'
well_barchart: no visible binding for global variable 'output_table'
well_barchart: no visible binding for global variable 'se'
well_barchart: no visible global function definition for '%>%'
well_barchart: no visible binding for global variable 'Time_s'
well_barchart: no visible binding for global variable 'Duration_s'
well_barchart: no visible binding for global variable 'Size_spikes'
well_barchart: no visible binding for global variable
  'Recording_identifier'
well_barchart: no visible binding for global variable '.'
well_barchart: no visible binding for global variable 'well'
well_barchart: no visible binding for global variable 'variable'
well_barchart: no visible binding for global variable 'parameter'
well_barchart: no visible binding for global variable 'recording_time'
well_barchart: no visible binding for global variable 'value'
well_barchart: no visible global function definition for 'aes'
well_barchart: no visible global function definition for
  'position_dodge'
well_barchart: no visible global function definition for
  'position_jitterdodge'
well_burst_duration: no visible binding for global variable
  'output_table'
well_burst_duration: no visible global function definition for '%>%'
well_burst_duration: no visible binding for global variable '.'
well_burst_duration: no visible binding for global variable 'Time_s'
well_burst_duration: no visible binding for global variable
  'Recording_identifier'
well_burst_duration: no visible binding for global variable 'well'
well_burst_duration: no visible binding for global variable
  'Duration_s'
well_burst_duration: no visible global function definition for 'sd'
well_burst_duration: no visible global function definition for
  'ungroup'
well_burst_duration: no visible binding for global variable 'Electrode'
well_burst_duration: no visible binding for global variable
  'Size_spikes'
well_burst_duration: no visible binding for global variable
  'well_duration_raw'
well_burst_duration: no visible binding for global variable
  'well_duration_mean'
well_burst_duration: no visible binding for global variable
  'well_duration_sd'
well_burst_duration: no visible binding for global variable
  'well_duration_se'
well_mean_burst_ISI: no visible binding for global variable
  'output_table'
well_mean_burst_ISI: no visible global function definition for '%>%'
well_mean_burst_ISI: no visible binding for global variable '.'
well_mean_burst_ISI: no visible binding for global variable 'Time_s'
well_mean_burst_ISI: no visible binding for global variable
  'Recording_identifier'
well_mean_burst_ISI: no visible binding for global variable
  'Duration_s'
well_mean_burst_ISI: no visible binding for global variable
  'Size_spikes'
well_mean_burst_ISI: no visible binding for global variable 'well'
well_mean_burst_ISI: no visible binding for global variable
  'mean_burst_ISI_s'
well_mean_burst_ISI: no visible global function definition for 'sd'
well_mean_burst_ISI: no visible global function definition for
  'ungroup'
well_mean_burst_ISI: no visible binding for global variable 'Electrode'
well_mean_burst_ISI: no visible binding for global variable
  'well_avg_mean_burst_ISI'
well_mean_burst_ISI: no visible binding for global variable
  'well_sd_mean_burst_ISI'
well_mean_burst_ISI: no visible binding for global variable
  'well_se_mean_burst_ISI'
well_number_of_bursts: no visible binding for global variable
  'output_table'
well_number_of_bursts: no visible global function definition for '%>%'
well_number_of_bursts: no visible binding for global variable
  'Electrode'
well_number_of_bursts: no visible binding for global variable
  'Recording_identifier'
well_number_of_bursts: no visible binding for global variable 'well'
well_number_of_bursts: no visible binding for global variable '.'
well_number_of_bursts: no visible binding for global variable 'Time_s'
well_number_of_bursts: no visible global function definition for
  'add_count'
well_number_of_bursts: no visible global function definition for
  'ungroup'
well_number_of_bursts: no visible binding for global variable
  'electrode_burst_count'
well_number_of_bursts: no visible global function definition for 'sd'
well_number_of_bursts: no visible binding for global variable
  'well_burst_count_mean'
well_number_of_bursts: no visible binding for global variable
  'well_burst_count_sd'
well_number_of_bursts: no visible binding for global variable
  'well_burst_count_se'
well_spikes_per_burst: no visible binding for global variable
  'output_table'
well_spikes_per_burst: no visible global function definition for '%>%'
well_spikes_per_burst: no visible binding for global variable '.'
well_spikes_per_burst: no visible binding for global variable 'Time_s'
well_spikes_per_burst: no visible binding for global variable
  'Recording_identifier'
well_spikes_per_burst: no visible binding for global variable 'well'
well_spikes_per_burst: no visible binding for global variable
  'Size_spikes'
well_spikes_per_burst: no visible global function definition for 'sd'
well_spikes_per_burst: no visible global function definition for
  'ungroup'
well_spikes_per_burst: no visible binding for global variable
  'Electrode'
well_spikes_per_burst: no visible binding for global variable
  'Duration_s'
well_spikes_per_burst: no visible binding for global variable
  'well_spikes_raw'
well_spikes_per_burst: no visible binding for global variable
  'well_spikes_mean'
well_spikes_per_burst: no visible binding for global variable
  'well_spikes_sd'
well_spikes_per_burst: no visible binding for global variable
  'well_spikes_se'
Undefined global functions or variables:
  %>% . ...1 .SD := Duration_s Electrode Recording_identifier
  Size_spikes Time_s Well X1 add_count aes avg_mean_burst_ISI
  burst_count duration_mean duration_raw duration_sd duration_se
  electrode_burst_count element_text experimental_condition
  mean_burst_ISI_s output_table parameter position_dodge
  position_jitterdodge read_excel read_xls read_xlsx recording_time sd
  sd_mean_burst_ISI se se_mean_burst_ISI spikes_mean spikes_raw
  spikes_sd spikes_se str_sub synchrony_index theme ungroup value
  variable well well_avg_mean_burst_ISI well_burst_count_mean
  well_burst_count_sd well_burst_count_se well_duration_mean
  well_duration_raw well_duration_sd well_duration_se
  well_sd_mean_burst_ISI well_se_mean_burst_ISI well_spikes_mean
  well_spikes_raw well_spikes_sd well_spikes_se
Consider adding
  importFrom("stats", "sd")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'single_electrode_barchart.Rd':
  \usage lines wider than 90 characters:
         "A1_|A2_|A3_|A4_|A5_|A6_|B1_|B2_|B3_|B4_|B5_|B6_|C1_\n                                  |C2_|C3_|C4_|C5_|C6_|D1_|D2_|D3_|D4_|D5_|D6 ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... OK
  Running 'testthat.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [13s] OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 5 NOTEs