downloading reverse dependencies ‘MDgof’ trying URL 'file:///data/Repositories/CRAN/src/contrib/MDgof_1.0.0.tar.gz' Content type 'unknown' length 179514 bytes (175 KB) ================================================== installing dependencies ‘Ball’, ‘gTests’, ‘MD2sample’ begin installing package ‘gTests’ begin installing package ‘Ball’ * installing *source* package ‘gTests’ ... ** this is package ‘gTests’ version ‘0.2’ ** package ‘gTests’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gTests) * installing *source* package ‘Ball’ ... ** this is package ‘Ball’ version ‘1.3.13’ ** package ‘Ball’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIoWIVN/R.INSTALL95c2c7c212a36/Ball/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_BUILD -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BD.c -o BD.o BD.c: In function ‘BD’: BD.c:196: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 196 | #pragma omp parallel BD.c:201: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 201 | #pragma omp for BD.c: In function ‘UBD’: BD.c:285: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 285 | #pragma omp parallel BD.c:290: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 290 | #pragma omp for BD.c: In function ‘KBD’: BD.c:684: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 684 | #pragma omp parallel BD.c:689: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 689 | #pragma omp for BD.c: In function ‘UKBD’: BD.c:941: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 941 | #pragma omp parallel BD.c:944: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 944 | #pragma omp for gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_BUILD -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BI.c -o BI.o BI.c: In function ‘BI’: BI.c:372: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 372 | #pragma omp parallel BI.c:376: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 376 | #pragma omp for BI.c:413: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 413 | #pragma omp parallel BI.c:417: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 417 | #pragma omp for BI.c: In function ‘UBI’: BI.c:542: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 542 | #pragma omp parallel BI.c:547: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 547 | #pragma omp for gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_BUILD -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ball_init.c -o ball_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_BUILD -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcor.c -o bcor.o bcor.c: In function ‘_bcor_test’: bcor.c:449: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 449 | #pragma omp parallel bcor.c:456: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 456 | #pragma omp for bcor.c: In function ‘_u_bcor_test’: bcor.c:536: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 536 | #pragma omp parallel bcor.c:545: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 545 | #pragma omp for bcor.c: In function ‘_bcor_k_sample’: bcor.c:822: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 822 | #pragma omp parallel bcor.c:825: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 825 | #pragma omp for gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_BUILD -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bd_gwas.c -o bd_gwas.o bd_gwas.c: In function ‘bd_gwas’: bd_gwas.c:216: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 216 | #pragma omp parallel bd_gwas.c:220: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 220 | #pragma omp for bd_gwas.c:246:5: warning: ‘batch_num’ may be used uninitialized [-Wmaybe-uninitialized] 246 | free_int_matrix(randn_mat, batch_num, n - 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bd_gwas.c:203:9: note: ‘batch_num’ was declared here 203 | int batch_num, fix_batch_num; | ^~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_BUILD -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdd_matrix.c -o bdd_matrix.o bdd_matrix.c: In function ‘bdd_matrix_bias_two_group’: bdd_matrix.c:95: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 95 | #pragma omp parallel bdd_matrix.c:98: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 98 | #pragma omp for bdd_matrix.c: In function ‘bdd_matrix_bias’: bdd_matrix.c:162: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 162 | #pragma omp parallel bdd_matrix.c:165: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 165 | #pragma omp for gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_BUILD -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kbcov.c -o kbcov.o kbcov.c: In function ‘KBCOV’: kbcov.c:143: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 143 | #pragma omp parallel kbcov.c:147: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 147 | #pragma omp for gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_BUILD -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kbd.c -o kbd.o kbd.c: In function ‘KBD3’: kbd.c:493: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 493 | #pragma omp parallel kbd.c:500: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 500 | #pragma omp for kbd.c: In function ‘bd_gwas_screening’: kbd.c:674: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 674 | #pragma omp parallel kbd.c:678: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 678 | #pragma omp for kbd.c:769: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 769 | #pragma omp parallel kbd.c:775: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 775 | #pragma omp for kbd.c: In function ‘bd_gwas_refining_single’: kbd.c:957: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 957 | #pragma omp parallel kbd.c:963: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 963 | #pragma omp for kbd.c: In function ‘bd_gwas_refining’: kbd.c:1121: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1121 | #pragma omp parallel kbd.c:1127: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 1127 | #pragma omp for gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_BUILD -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c surv.c -o surv.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_BUILD -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utilities.c -o utilities.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Ball.so BD.o BI.o ball_init.o bcor.o bd_gwas.o bdd_matrix.o kbcov.o kbd.o surv.o utilities.o -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIoWIVN/R.INSTALL95c2c7c212a36/Ball/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Ball/00new/Ball/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Ball) begin installing package ‘MD2sample’ * installing *source* package ‘MD2sample’ ... ** this is package ‘MD2sample’ version ‘1.2.0’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmgMyzP/R.INSTALL95cfe7d94aa07/MD2sample/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Cpporder.cpp -o Cpporder.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TS_cont.cpp -o TS_cont.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TS_disc.cpp -o TS_disc.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c calcTS.cpp -o calcTS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c find_dist.cpp -o find_dist.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gen_sim_data.cpp -o gen_sim_data.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mdecdf.cpp -o mdecdf.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mmdagg.cpp -o mmdagg.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c powerC.cpp -o powerC.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c testC.cpp -o testC.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c transform01.cpp -o transform01.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o MD2sample.so Cpporder.o RcppExports.o TS_cont.o TS_disc.o calcTS.o find_dist.o gen_sim_data.o mdecdf.o mmdagg.o powerC.o testC.o transform01.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmgMyzP/R.INSTALL95cfe7d94aa07/MD2sample/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MD2sample/00new/MD2sample/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MD2sample) checking MD2sample_1.2.0.tar.gz ... checking MDgof_1.0.0.tar.gz ... Depends: Package: MD2sample Depends: R (>= 3.5) Imports: Rcpp, parallel, stats, FNN, copula, ade4, gTests, igraph, lsa, microbenchmark, mvtnorm, Ball LinkingTo: Rcpp Timings: user system elapsed MD2sample 173.642 6.937 183.11 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 0 Check results summary: MD2sample ... OK rdepends_MDgof ... NOTE * checking compiled code ... NOTE Check results changes: Package: MDgof Check: compiled code New result: NOTE