* using log directory ‘/home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck’
* using R Under development (unstable) (2025-01-27 r87654)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-12) 14.2.0
    GNU Fortran (Debian 14.2.0-12) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘MBNMAtime/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MBNMAtime’ version ‘0.2.6’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/7s] NOTE
Maintainer: ‘Hugo Pedder <hugopedder@gmail.com>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  MBNMA (3:59, 12:86)
  Pedder (14:27)
  al (14:37)
  et (14:34)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2024-11-20 as issues were not corrected
    despite reminders.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MBNMAtime’ can be installed ... [5s/5s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/11s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [7s/7s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [9s/9s] OK
  Running ‘testthat.R’ [9s/9s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [117s/117s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘consistencychecking-3.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-8-1.png
672x240 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19052 bytes
Input file size = 19154 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14912
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14912

Output IDAT size = 14912 bytes (4140 bytes decrease)
Output file size = 14990 bytes (4164 bytes = 21.74% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-8-2.png
672x240 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33676 bytes
Input file size = 33802 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26019
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26019

Output IDAT size = 26019 bytes (7657 bytes decrease)
Output file size = 26097 bytes (7705 bytes = 22.79% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31267 bytes
Input file size = 31381 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25404
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25404

Output IDAT size = 25404 bytes (5863 bytes decrease)
Output file size = 25482 bytes (5899 bytes = 18.80% decrease)

--- finished re-building ‘consistencychecking-3.Rmd’

--- re-building ‘dataexploration-1.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-1-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19072 bytes
Input file size = 19174 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16320
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16320

Output IDAT size = 16320 bytes (2752 bytes decrease)
Output file size = 16398 bytes (2776 bytes = 14.48% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-3-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 119981 bytes
Input file size = 120227 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 88771
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 88771

Output IDAT size = 88771 bytes (31210 bytes decrease)
Output file size = 88849 bytes (31378 bytes = 26.10% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25739 bytes
Input file size = 25853 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19919
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19919

Output IDAT size = 19919 bytes (5820 bytes decrease)
Output file size = 19997 bytes (5856 bytes = 22.65% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 131032 bytes
Input file size = 131290 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94428
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94428

Output IDAT size = 94428 bytes (36604 bytes decrease)
Output file size = 94506 bytes (36784 bytes = 28.02% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/pain.time-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 79747 bytes
Input file size = 79933 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57953
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57953

Output IDAT size = 57953 bytes (21794 bytes decrease)
Output file size = 58031 bytes (21902 bytes = 27.40% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/obese.time-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64122 bytes
Input file size = 64284 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45061
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45061

Output IDAT size = 45061 bytes (19061 bytes decrease)
Output file size = 45139 bytes (19145 bytes = 29.78% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/pain.binplot-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 88624 bytes
Input file size = 88822 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 65857
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 65857

Output IDAT size = 65857 bytes (22767 bytes decrease)
Output file size = 65935 bytes (22887 bytes = 25.77% decrease)

--- finished re-building ‘dataexploration-1.Rmd’

--- re-building ‘mbnmatime-overview.Rmd’ using rmarkdown
--- finished re-building ‘mbnmatime-overview.Rmd’

--- re-building ‘outputs-4.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 91902 bytes
Input file size = 92112 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 66877
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 66877

Output IDAT size = 66877 bytes (25025 bytes decrease)
Output file size = 66955 bytes (25157 bytes = 27.31% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20649 bytes
Input file size = 20751 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17265
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17265

Output IDAT size = 17265 bytes (3384 bytes decrease)
Output file size = 17343 bytes (3408 bytes = 16.42% decrease)


Quitting from lines 148-161 [unnamed-chunk-9] (outputs-4.Rmd)
Error: processing vignette 'outputs-4.Rmd' failed with diagnostics:
there is no package called 'zoo'
--- failed re-building ‘outputs-4.Rmd’

--- re-building ‘predictions-5.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 67095 bytes
Input file size = 67269 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 53140
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 53140

Output IDAT size = 53140 bytes (13955 bytes decrease)
Output file size = 53218 bytes (14051 bytes = 20.89% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-7-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31503 bytes
Input file size = 31617 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24412
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24412

Output IDAT size = 24412 bytes (7091 bytes decrease)
Output file size = 24490 bytes (7127 bytes = 22.54% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 75422 bytes
Input file size = 75608 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 58345
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 58345

Output IDAT size = 58345 bytes (17077 bytes decrease)
Output file size = 58423 bytes (17185 bytes = 22.73% decrease)

** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-9-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 53640 bytes
Input file size = 53790 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 40452
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 40452

Output IDAT size = 40452 bytes (13188 bytes decrease)
Output file size = 40530 bytes (13260 bytes = 24.65% decrease)

--- finished re-building ‘predictions-5.Rmd’

--- re-building ‘runmbnmatime-2.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/runmbnmatime-2_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37855 bytes
Input file size = 37981 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30487
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30487

Output IDAT size = 30487 bytes (7368 bytes decrease)
Output file size = 30565 bytes (7416 bytes = 19.53% decrease)

--- finished re-building ‘runmbnmatime-2.Rmd’

SUMMARY: processing the following file failed:
  ‘outputs-4.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [3s/3s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE