* using log directory ‘/home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck’ * using R Under development (unstable) (2025-01-27 r87654) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (Debian 14.2.0-12) 14.2.0 GNU Fortran (Debian 14.2.0-12) 14.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘MBNMAtime/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MBNMAtime’ version ‘0.2.6’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/8s] NOTE Maintainer: ‘Hugo Pedder ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: MBNMA (3:59, 12:86) Pedder (14:27) al (14:37) et (14:34) CRAN repository db overrides: X-CRAN-Comment: Archived on 2024-11-20 as issues were not corrected despite reminders. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MBNMAtime’ can be installed ... [5s/5s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s/11s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [7s/7s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [8s/8s] OK Running ‘testthat.R’ [8s/8s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [97s/97s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘consistencychecking-3.Rmd’ using rmarkdown Quitting from lines 142-147 [unnamed-chunk-8] (consistencychecking-3.Rmd) Error: processing vignette 'consistencychecking-3.Rmd' failed with diagnostics: there is no package called 'ggdist' --- failed re-building ‘consistencychecking-3.Rmd’ --- re-building ‘dataexploration-1.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-1-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19072 bytes Input file size = 19174 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16320 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16320 Output IDAT size = 16320 bytes (2752 bytes decrease) Output file size = 16398 bytes (2776 bytes = 14.48% decrease) ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-3-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 119981 bytes Input file size = 120227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88771 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88771 Output IDAT size = 88771 bytes (31210 bytes decrease) Output file size = 88849 bytes (31378 bytes = 26.10% decrease) ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-5-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25739 bytes Input file size = 25853 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19919 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19919 Output IDAT size = 19919 bytes (5820 bytes decrease) Output file size = 19997 bytes (5856 bytes = 22.65% decrease) ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-7-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 131032 bytes Input file size = 131290 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94428 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94428 Output IDAT size = 94428 bytes (36604 bytes decrease) Output file size = 94506 bytes (36784 bytes = 28.02% decrease) ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/pain.time-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 79747 bytes Input file size = 79933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57953 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57953 Output IDAT size = 57953 bytes (21794 bytes decrease) Output file size = 58031 bytes (21902 bytes = 27.40% decrease) ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/obese.time-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 64122 bytes Input file size = 64284 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45061 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45061 Output IDAT size = 45061 bytes (19061 bytes decrease) Output file size = 45139 bytes (19145 bytes = 29.78% decrease) Quitting from lines 144-146 [pain.binplot] (dataexploration-1.Rmd) Error: processing vignette 'dataexploration-1.Rmd' failed with diagnostics: there is no package called 'png' --- failed re-building ‘dataexploration-1.Rmd’ --- re-building ‘mbnmatime-overview.Rmd’ using rmarkdown --- finished re-building ‘mbnmatime-overview.Rmd’ --- re-building ‘outputs-4.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-5-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 92093 bytes Input file size = 92303 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66739 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66739 Output IDAT size = 66739 bytes (25354 bytes decrease) Output file size = 66817 bytes (25486 bytes = 27.61% decrease) Quitting from lines 124-133 [unnamed-chunk-7] (outputs-4.Rmd) Error: processing vignette 'outputs-4.Rmd' failed with diagnostics: there is no package called 'ggdist' --- failed re-building ‘outputs-4.Rmd’ --- re-building ‘predictions-5.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-5-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 66861 bytes Input file size = 67035 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52634 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52634 Output IDAT size = 52634 bytes (14227 bytes decrease) Output file size = 52712 bytes (14323 bytes = 21.37% decrease) ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-7-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31453 bytes Input file size = 31567 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24363 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24363 Output IDAT size = 24363 bytes (7090 bytes decrease) Output file size = 24441 bytes (7126 bytes = 22.57% decrease) ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-8-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 74850 bytes Input file size = 75036 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57619 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57619 Output IDAT size = 57619 bytes (17231 bytes decrease) Output file size = 57697 bytes (17339 bytes = 23.11% decrease) ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-9-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48475 bytes Input file size = 48613 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36719 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36719 Output IDAT size = 36719 bytes (11756 bytes decrease) Output file size = 36797 bytes (11816 bytes = 24.31% decrease) --- finished re-building ‘predictions-5.Rmd’ --- re-building ‘runmbnmatime-2.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/runmbnmatime-2_files/figure-html/unnamed-chunk-11-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37626 bytes Input file size = 37752 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30230 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30230 Output IDAT size = 30230 bytes (7396 bytes decrease) Output file size = 30308 bytes (7444 bytes = 19.72% decrease) --- finished re-building ‘runmbnmatime-2.Rmd’ SUMMARY: processing the following files failed: ‘consistencychecking-3.Rmd’ ‘dataexploration-1.Rmd’ ‘outputs-4.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [4s/5s] OK * checking HTML version of manual ... [3s/3s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE