Package check result: ERROR Check: CRAN incoming feasibility, Result: NOTE Maintainer: ‘Hugo Pedder ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: MBNMA (3:59, 12:86) Pedder (14:27) al (14:37) et (14:34) CRAN repository db overrides: X-CRAN-Comment: Archived on 2024-11-20 as issues were not corrected despite reminders. Check: examples, Result: ERROR Running examples in ‘MBNMAtime-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: plot.mb.network > ### Title: Create an 'mb.network' object > ### Aliases: plot.mb.network mb.network > > ### ** Examples > > > > # Using the osteoarthritis dataset > print(osteopain) studyID time y se treatment arm treatname 1 Baerwald 2010 0.000 6.548000 0.08613561 Pl_0 1 Placebo_0 2 Baerwald 2010 2.000 5.398000 0.09317367 Pl_0 1 Placebo_0 3 Baerwald 2010 6.000 4.968000 0.09969241 Pl_0 1 Placebo_0 4 Baerwald 2010 13.000 4.751000 0.10850034 Pl_0 1 Placebo_0 5 Baerwald 2010 0.000 6.399000 0.12738195 Na_1000 2 Naproxen_1000 6 Baerwald 2010 2.000 4.029000 0.13337086 Na_1000 2 Naproxen_1000 7 Baerwald 2010 6.000 3.719000 0.13861218 Na_1000 2 Naproxen_1000 8 Baerwald 2010 13.000 3.968000 0.14647069 Na_1000 2 Naproxen_1000 9 Baerwald 2010 0.000 6.625000 0.09003349 Na_1500 3 Naproxcinod_1500 10 Baerwald 2010 2.000 4.435000 0.09258069 Na_1500 3 Naproxcinod_1500 11 Baerwald 2010 6.000 4.085000 0.09645929 Na_1500 3 Naproxcinod_1500 12 Baerwald 2010 13.000 4.044000 0.10175895 Na_1500 3 Naproxcinod_1500 13 Bensen 1999 0.000 5.405620 0.12743652 Pl_0 1 Placebo_0 14 Bensen 1999 2.000 5.020210 0.13967062 Pl_0 1 Placebo_0 15 Bensen 1999 12.000 4.720889 0.15125135 Pl_0 1 Placebo_0 16 Bensen 1999 0.000 5.545080 0.12875036 Na_1000 2 Naproxen_1000 17 Bensen 1999 2.000 4.124826 0.13193069 Na_1000 2 Naproxen_1000 18 Bensen 1999 12.000 4.267348 0.14313626 Na_1000 2 Naproxen_1000 19 Bensen 1999 0.000 5.405620 0.12756608 Ce_400 3 Celebrex_400 20 Bensen 1999 2.000 3.962108 0.13072450 Ce_400 3 Celebrex_400 21 Bensen 1999 12.000 3.965032 0.14176423 Ce_400 3 Celebrex_400 22 Bensen 1999 0.000 5.266090 0.12930813 Ce_200 4 Celebrex_200 23 Bensen 1999 2.000 3.822510 0.13230924 Ce_200 4 Celebrex_200 24 Bensen 1999 12.000 3.720855 0.14325486 Ce_200 4 Celebrex_200 25 Bensen 1999 0.000 5.382295 0.12702820 Ce_100 5 Celebrex_100 26 Bensen 1999 2.000 4.345749 0.13030080 Ce_100 5 Celebrex_100 27 Bensen 1999 12.000 4.325553 0.14135801 Ce_100 5 Celebrex_100 28 Bingham 2007a 0.000 6.660000 0.14375175 Pl_0 1 Placebo_0 29 Bingham 2007a 2.000 5.905123 0.15295812 Pl_0 1 Placebo_0 30 Bingham 2007a 4.000 5.597386 0.15878729 Pl_0 1 Placebo_0 31 Bingham 2007a 8.000 5.374769 0.16812945 Pl_0 1 Placebo_0 32 Bingham 2007a 12.000 5.124054 0.17621052 Pl_0 1 Placebo_0 33 Bingham 2007a 0.000 6.750000 0.10499753 Ce_200 2 Celebrex_200 34 Bingham 2007a 2.000 4.606352 0.10894260 Ce_200 2 Celebrex_200 35 Bingham 2007a 4.000 4.270519 0.11133890 Ce_200 2 Celebrex_200 36 Bingham 2007a 8.000 4.300451 0.11563667 Ce_200 2 Celebrex_200 37 Bingham 2007a 12.000 4.274297 0.11895791 Ce_200 2 Celebrex_200 38 Bingham 2007a 0.000 6.740000 0.10658817 Et_30 3 Etoricoxib_30 39 Bingham 2007a 2.000 4.245301 0.11123171 Et_30 3 Etoricoxib_30 40 Bingham 2007a 4.000 4.021748 0.11386291 Et_30 3 Etoricoxib_30 41 Bingham 2007a 8.000 4.037578 0.11802862 Et_30 3 Etoricoxib_30 42 Bingham 2007a 12.000 3.899251 0.12156902 Et_30 3 Etoricoxib_30 43 Bingham 2007b 0.000 6.640000 0.15968999 Pl_0 1 Placebo_0 44 Bingham 2007b 2.000 5.519577 0.17109473 Pl_0 1 Placebo_0 45 Bingham 2007b 4.000 5.097473 0.17758313 Pl_0 1 Placebo_0 46 Bingham 2007b 8.000 5.011880 0.18711207 Pl_0 1 Placebo_0 47 Bingham 2007b 12.000 4.999232 0.19569508 Pl_0 1 Placebo_0 48 Bingham 2007b 0.000 6.730000 0.11922685 Ce_200 2 Celebrex_200 49 Bingham 2007b 2.000 4.384345 0.11363334 Ce_200 2 Celebrex_200 50 Bingham 2007b 4.000 4.137306 0.11584245 Ce_200 2 Celebrex_200 51 Bingham 2007b 8.000 4.022573 0.12001322 Ce_200 2 Celebrex_200 52 Bingham 2007b 12.000 3.936906 0.12354571 Ce_200 2 Celebrex_200 53 Bingham 2007b 0.000 6.870000 0.10520605 Et_30 3 Etoricoxib_30 54 Bingham 2007b 2.000 4.465766 0.11429788 Et_30 3 Etoricoxib_30 55 Bingham 2007b 4.000 4.233316 0.11672457 Et_30 3 Etoricoxib_30 56 Bingham 2007b 8.000 4.089368 0.12087161 Et_30 3 Etoricoxib_30 57 Bingham 2007b 12.000 4.091271 0.12433858 Et_30 3 Etoricoxib_30 58 Birbara 2006_1 0.000 6.850000 0.19248710 Pl_0 1 Placebo_0 59 Birbara 2006_1 2.000 5.050000 0.19825783 Pl_0 1 Placebo_0 60 Birbara 2006_1 4.000 4.900000 0.20546535 Pl_0 1 Placebo_0 61 Birbara 2006_1 6.000 4.740000 0.21210711 Pl_0 1 Placebo_0 62 Birbara 2006_1 0.000 6.830000 0.13567477 Ce_200 2 Celebrex_200 63 Birbara 2006_1 2.000 4.290000 0.13735626 Ce_200 2 Celebrex_200 64 Birbara 2006_1 4.000 4.090000 0.14020133 Ce_200 2 Celebrex_200 65 Birbara 2006_1 6.000 3.930000 0.14285150 Ce_200 2 Celebrex_200 66 Birbara 2006_1 0.000 7.050000 0.12570054 Ro_12 3 Rofecoxib_12 67 Birbara 2006_1 2.000 4.650000 0.13581507 Ro_12 3 Rofecoxib_12 68 Birbara 2006_1 4.000 4.360000 0.13919061 Ro_12 3 Rofecoxib_12 69 Birbara 2006_1 6.000 4.190000 0.14163496 Ro_12 3 Rofecoxib_12 70 Birbara 2006_2 0.000 6.870000 0.19089880 Pl_0 1 Placebo_0 71 Birbara 2006_2 2.000 4.930000 0.19254502 Pl_0 1 Placebo_0 72 Birbara 2006_2 4.000 4.760000 0.19892926 Pl_0 1 Placebo_0 73 Birbara 2006_2 6.000 4.590000 0.20627513 Pl_0 1 Placebo_0 74 Birbara 2006_2 0.000 6.680000 0.13307692 Ce_200 2 Celebrex_200 75 Birbara 2006_2 2.000 4.190000 0.13377582 Ce_200 2 Celebrex_200 76 Birbara 2006_2 4.000 3.700000 0.13702105 Ce_200 2 Celebrex_200 77 Birbara 2006_2 6.000 3.540000 0.13955657 Ce_200 2 Celebrex_200 78 Birbara 2006_2 0.000 6.700000 0.12688825 Ro_12 3 Rofecoxib_12 79 Birbara 2006_2 2.000 3.720000 0.13837981 Ro_12 3 Rofecoxib_12 80 Birbara 2006_2 4.000 3.720000 0.14138984 Ro_12 3 Rofecoxib_12 81 Birbara 2006_2 6.000 3.620000 0.14410240 Ro_12 3 Rofecoxib_12 88 Chappell 2009 0.000 5.175000 0.11801842 Pl_0 1 Placebo_0 89 Chappell 2009 13.000 3.430000 0.16255069 Pl_0 1 Placebo_0 90 Chappell 2009 0.000 5.120000 0.11135620 Du_90 2 Duloxetine_90 91 Chappell 2009 13.000 2.985000 0.15195876 Du_90 2 Duloxetine_90 92 Chappell 2011 0.000 5.475000 0.13867505 Pl_0 1 Placebo_0 93 Chappell 2011 13.000 3.880000 0.18527144 Pl_0 1 Placebo_0 94 Chappell 2011 0.000 5.490000 0.16096163 Du_90 2 Duloxetine_90 95 Chappell 2011 13.000 3.180000 0.17937364 Du_90 2 Duloxetine_90 96 Clegg 2006 0.000 4.742000 0.08388064 Pl_0 1 Placebo_0 97 Clegg 2006 24.000 3.020000 0.12785580 Pl_0 1 Placebo_0 98 Clegg 2006 0.000 4.698000 0.08333074 Ce_200 2 Celebrex_200 99 Clegg 2006 24.000 2.714000 0.12146325 Ce_200 2 Celebrex_200 100 DeLemos 2011 0.000 6.016000 0.14637110 Pl_0 1 Placebo_0 101 DeLemos 2011 1.000 4.660234 0.14174890 Pl_0 1 Placebo_0 102 DeLemos 2011 2.000 4.265908 0.14423560 Pl_0 1 Placebo_0 103 DeLemos 2011 3.000 3.980672 0.14662378 Pl_0 1 Placebo_0 104 DeLemos 2011 6.000 3.643174 0.15307332 Pl_0 1 Placebo_0 105 DeLemos 2011 9.000 3.292040 0.15809206 Pl_0 1 Placebo_0 106 DeLemos 2011 12.000 3.268146 0.16279536 Pl_0 1 Placebo_0 107 DeLemos 2011 0.000 5.738000 0.13523145 Ce_200 2 Celebrex_200 108 DeLemos 2011 1.000 3.746574 0.13973694 Ce_200 2 Celebrex_200 109 DeLemos 2011 2.000 3.284066 0.14128381 Ce_200 2 Celebrex_200 110 DeLemos 2011 3.000 2.930678 0.14255246 Ce_200 2 Celebrex_200 111 DeLemos 2011 6.000 2.511332 0.14627650 Ce_200 2 Celebrex_200 112 DeLemos 2011 9.000 2.555680 0.14916326 Ce_200 2 Celebrex_200 113 DeLemos 2011 12.000 2.545424 0.15202178 Ce_200 2 Celebrex_200 114 DeLemos 2011 0.000 6.124000 0.15212591 Tr_300 3 Tramadol_300 115 DeLemos 2011 1.000 4.332964 0.14113504 Tr_300 3 Tramadol_300 116 DeLemos 2011 2.000 3.693184 0.14233657 Tr_300 3 Tramadol_300 117 DeLemos 2011 3.000 3.230648 0.14383500 Tr_300 3 Tramadol_300 118 DeLemos 2011 6.000 2.879542 0.14753666 Tr_300 3 Tramadol_300 119 DeLemos 2011 9.000 2.828406 0.15064388 Tr_300 3 Tramadol_300 120 DeLemos 2011 12.000 2.777240 0.15325220 Tr_300 3 Tramadol_300 121 DeLemos 2011 0.000 6.058000 0.13624697 Tr_200 4 Tramadol_200 122 DeLemos 2011 1.000 4.346600 0.14061110 Tr_200 4 Tramadol_200 123 DeLemos 2011 2.000 3.993182 0.14238944 Tr_200 4 Tramadol_200 124 DeLemos 2011 3.000 3.762492 0.14390273 Tr_200 4 Tramadol_200 125 DeLemos 2011 6.000 3.302266 0.14727855 Tr_200 4 Tramadol_200 126 DeLemos 2011 9.000 3.223858 0.15077558 Tr_200 4 Tramadol_200 127 DeLemos 2011 12.000 3.240874 0.15337054 Tr_200 4 Tramadol_200 128 DeLemos 2011 0.000 5.968000 0.14290302 Tr_100 5 Tramadol_100 129 DeLemos 2011 1.000 4.701114 0.14013124 Tr_100 5 Tramadol_100 130 DeLemos 2011 2.000 4.115910 0.14149865 Tr_100 5 Tramadol_100 131 DeLemos 2011 3.000 3.667038 0.14301421 Tr_100 5 Tramadol_100 132 DeLemos 2011 6.000 3.479538 0.14674325 Tr_100 5 Tramadol_100 133 DeLemos 2011 9.000 3.605646 0.14999098 Tr_100 5 Tramadol_100 134 DeLemos 2011 12.000 3.349994 0.15257853 Tr_100 5 Tramadol_100 135 Enrich 1999 0.000 6.003000 0.20107522 Pl_0 1 Placebo_0 136 Enrich 1999 1.000 5.643000 0.20685093 Pl_0 1 Placebo_0 137 Enrich 1999 2.000 5.273000 0.20991297 Pl_0 1 Placebo_0 138 Enrich 1999 4.000 5.233000 0.21850685 Pl_0 1 Placebo_0 139 Enrich 1999 6.000 5.123000 0.22585766 Pl_0 1 Placebo_0 140 Enrich 1999 0.000 6.436000 0.19999737 Ro_25 2 Rofecoxib_25 141 Enrich 1999 1.000 4.146000 0.20356012 Ro_25 2 Rofecoxib_25 142 Enrich 1999 2.000 3.646000 0.20541085 Ro_25 2 Rofecoxib_25 143 Enrich 1999 4.000 3.906000 0.21037141 Ro_25 2 Rofecoxib_25 144 Enrich 1999 6.000 3.576000 0.21440533 Ro_25 2 Rofecoxib_25 145 Enrich 1999 0.000 5.944000 0.19953406 Ro_125 3 Rofecoxib_125 146 Enrich 1999 1.000 3.484000 0.20158925 Ro_125 3 Rofecoxib_125 147 Enrich 1999 2.000 3.014000 0.20390576 Ro_125 3 Rofecoxib_125 148 Enrich 1999 4.000 3.124000 0.20849592 Ro_125 3 Rofecoxib_125 149 Enrich 1999 6.000 2.824000 0.21260208 Ro_125 3 Rofecoxib_125 150 Fishman 2007 0.000 6.014000 0.11866399 Pl_0 1 Placebo_0 151 Fishman 2007 12.000 4.071478 0.13816027 Pl_0 1 Placebo_0 152 Fishman 2007 0.000 6.288000 0.18951979 Tr_300 2 Tramadol_300 153 Fishman 2007 12.000 3.395520 0.18848415 Tr_300 2 Tramadol_300 154 Fishman 2007 0.000 5.676000 0.15796474 Tr_200 3 Tramadol_200 155 Fishman 2007 12.000 3.246672 0.18748009 Tr_200 3 Tramadol_200 156 Fishman 2007 0.000 5.756000 0.15528789 Tr_100 4 Tramadol_100 157 Fishman 2007 12.000 3.361504 0.19021417 Tr_100 4 Tramadol_100 158 Fleischmann 2005 0.000 4.950000 0.10856203 Pl_0 1 Placebo_0 159 Fleischmann 2005 2.000 4.150000 0.11449208 Pl_0 1 Placebo_0 160 Fleischmann 2005 13.000 3.800000 0.13292276 Pl_0 1 Placebo_0 161 Fleischmann 2005 0.000 5.150000 0.07925469 Ce_200 2 Celebrex_200 162 Fleischmann 2005 2.000 3.700000 0.08106751 Ce_200 2 Celebrex_200 163 Fleischmann 2005 13.000 3.400000 0.08897460 Ce_200 2 Celebrex_200 164 Fleischmann 2005 0.000 4.950000 0.07854096 Lu_400 3 Lumiracoxib_400 165 Fleischmann 2005 2.000 3.400000 0.07952726 Lu_400 3 Lumiracoxib_400 166 Fleischmann 2005 13.000 3.100000 0.08732728 Lu_400 3 Lumiracoxib_400 167 Fleischmann 2005 0.000 5.150000 0.07536922 Lu_200 4 Lumiracoxib_200 168 Fleischmann 2005 2.000 3.600000 0.07969604 Lu_200 4 Lumiracoxib_200 169 Fleischmann 2005 13.000 3.300000 0.08726499 Lu_200 4 Lumiracoxib_200 170 Gana 2006 0.000 6.118000 0.13298113 Pl_0 1 Placebo_0 171 Gana 2006 1.000 5.278000 0.13368325 Pl_0 1 Placebo_0 172 Gana 2006 2.000 4.846000 0.13645321 Pl_0 1 Placebo_0 173 Gana 2006 3.000 4.746000 0.13873236 Pl_0 1 Placebo_0 174 Gana 2006 6.000 4.576000 0.14503567 Pl_0 1 Placebo_0 175 Gana 2006 9.000 4.604000 0.14996109 Pl_0 1 Placebo_0 176 Gana 2006 12.000 4.634000 0.15451115 Pl_0 1 Placebo_0 177 Gana 2006 0.000 5.932000 0.13584957 Tr_300 2 Tramadol_300 178 Gana 2006 1.000 4.534000 0.13381126 Tr_300 2 Tramadol_300 179 Gana 2006 2.000 4.076000 0.13543190 Tr_300 2 Tramadol_300 180 Gana 2006 3.000 3.920000 0.13660626 Tr_300 2 Tramadol_300 181 Gana 2006 6.000 3.790000 0.14032551 Tr_300 2 Tramadol_300 182 Gana 2006 9.000 3.862000 0.14378647 Tr_300 2 Tramadol_300 183 Gana 2006 12.000 3.854000 0.14624779 Tr_300 2 Tramadol_300 184 Gana 2006 0.000 6.304000 0.13034787 Tr_200 3 Tramadol_200 185 Gana 2006 1.000 5.030000 0.13379605 Tr_200 3 Tramadol_200 186 Gana 2006 2.000 4.498000 0.13535877 Tr_200 3 Tramadol_200 187 Gana 2006 3.000 4.300000 0.13697546 Tr_200 3 Tramadol_200 188 Gana 2006 6.000 4.172000 0.14047598 Tr_200 3 Tramadol_200 189 Gana 2006 9.000 4.154000 0.14352237 Tr_200 3 Tramadol_200 190 Gana 2006 12.000 4.074000 0.14613323 Tr_200 3 Tramadol_200 191 Gana 2006 0.000 6.164000 0.13973447 Tr_100 4 Tramadol_100 192 Gana 2006 1.000 5.026000 0.13345351 Tr_100 4 Tramadol_100 193 Gana 2006 2.000 4.666000 0.13494127 Tr_100 4 Tramadol_100 194 Gana 2006 3.000 4.446000 0.13629561 Tr_100 4 Tramadol_100 195 Gana 2006 6.000 4.114000 0.14008223 Tr_100 4 Tramadol_100 196 Gana 2006 9.000 4.052000 0.14324415 Tr_100 4 Tramadol_100 197 Gana 2006 12.000 4.020000 0.14598755 Tr_100 4 Tramadol_100 198 Gana 2006 0.000 5.960000 0.13185418 Tr_400 5 Tramadol_400 199 Gana 2006 1.000 4.678000 0.13349877 Tr_400 5 Tramadol_400 200 Gana 2006 2.000 4.230000 0.13504263 Tr_400 5 Tramadol_400 201 Gana 2006 3.000 3.898000 0.13645394 Tr_400 5 Tramadol_400 202 Gana 2006 6.000 3.700000 0.13994609 Tr_400 5 Tramadol_400 203 Gana 2006 9.000 3.708000 0.14305671 Tr_400 5 Tramadol_400 204 Gana 2006 12.000 3.804000 0.14586527 Tr_400 5 Tramadol_400 205 Gottesdiener 2002 0.000 7.062000 0.22216747 Pl_0 1 Placebo_0 206 Gottesdiener 2002 1.000 6.362000 0.22671752 Pl_0 1 Placebo_0 207 Gottesdiener 2002 2.000 6.262000 0.23247437 Pl_0 1 Placebo_0 208 Gottesdiener 2002 4.000 6.052000 0.24012258 Pl_0 1 Placebo_0 209 Gottesdiener 2002 6.000 5.902000 0.24781410 Pl_0 1 Placebo_0 210 Gottesdiener 2002 0.000 6.756000 0.16960703 Et_30 2 Etoricoxib_30 211 Gottesdiener 2002 1.000 4.796000 0.17227052 Et_30 2 Etoricoxib_30 212 Gottesdiener 2002 2.000 4.416000 0.17432054 Et_30 2 Etoricoxib_30 213 Gottesdiener 2002 4.000 4.476000 0.17798345 Et_30 2 Etoricoxib_30 214 Gottesdiener 2002 6.000 4.106000 0.18209630 Et_30 2 Etoricoxib_30 215 Gottesdiener 2002 0.000 6.854000 0.16202815 Et_90 3 Etoricoxib_90 216 Gottesdiener 2002 1.000 4.134000 0.16437693 Et_90 3 Etoricoxib_90 217 Gottesdiener 2002 2.000 4.084000 0.16637489 Et_90 3 Etoricoxib_90 218 Gottesdiener 2002 4.000 3.914000 0.16972969 Et_90 3 Etoricoxib_90 219 Gottesdiener 2002 6.000 3.794000 0.17288616 Et_90 3 Etoricoxib_90 220 Gottesdiener 2002 0.000 6.686000 0.16193198 Et_60 4 Etoricoxib_60 221 Gottesdiener 2002 1.000 3.866000 0.16433909 Et_60 4 Etoricoxib_60 222 Gottesdiener 2002 2.000 3.616000 0.16650567 Et_60 4 Etoricoxib_60 223 Gottesdiener 2002 4.000 3.576000 0.17027961 Et_60 4 Etoricoxib_60 224 Gottesdiener 2002 6.000 3.406000 0.17343517 Et_60 4 Etoricoxib_60 225 Gottesdiener 2002 0.000 6.873000 0.15841042 Et_5 5 Etoricoxib_5 226 Gottesdiener 2002 1.000 5.823000 0.16082866 Et_5 5 Etoricoxib_5 227 Gottesdiener 2002 2.000 5.343000 0.16260877 Et_5 5 Etoricoxib_5 228 Gottesdiener 2002 4.000 5.203000 0.16620577 Et_5 5 Etoricoxib_5 229 Gottesdiener 2002 6.000 4.823000 0.16929977 Et_5 5 Etoricoxib_5 230 Gottesdiener 2002 0.000 7.009000 0.16055675 Et_10 6 Etoricoxib_10 231 Gottesdiener 2002 1.000 5.599000 0.16276707 Et_10 6 Etoricoxib_10 232 Gottesdiener 2002 2.000 5.079000 0.16477139 Et_10 6 Etoricoxib_10 233 Gottesdiener 2002 4.000 5.239000 0.16891879 Et_10 6 Etoricoxib_10 234 Gottesdiener 2002 6.000 5.219000 0.17199388 Et_10 6 Etoricoxib_10 235 Kivitz 2001 0.000 5.296405 0.11365985 Pl_0 1 Placebo_0 236 Kivitz 2001 2.000 4.997006 0.12490734 Pl_0 1 Placebo_0 237 Kivitz 2001 12.000 4.862275 0.14493324 Pl_0 1 Placebo_0 238 Kivitz 2001 0.000 5.266465 0.11587666 Na_1000 2 Naproxen_1000 239 Kivitz 2001 2.000 3.896707 0.07993053 Na_1000 2 Naproxen_1000 240 Kivitz 2001 12.000 3.994012 0.09000872 Na_1000 2 Naproxen_1000 241 Kivitz 2001 0.000 5.416170 0.11432410 Ce_400 3 Celebrex_400 242 Kivitz 2001 2.000 4.136228 0.11773760 Ce_400 3 Celebrex_400 243 Kivitz 2001 12.000 4.248502 0.12824272 Ce_400 3 Celebrex_400 244 Kivitz 2001 0.000 5.303890 0.11595175 Ce_200 4 Celebrex_200 245 Kivitz 2001 2.000 4.046407 0.11936596 Ce_200 4 Celebrex_200 246 Kivitz 2001 12.000 4.255988 0.13013062 Ce_200 4 Celebrex_200 247 Kivitz 2001 0.000 5.244010 0.11372082 Ce_100 5 Celebrex_100 248 Kivitz 2001 2.000 4.398204 0.15003125 Ce_100 5 Celebrex_100 249 Kivitz 2001 12.000 4.495509 0.15003125 Ce_100 5 Celebrex_100 250 Kivitz 2002 0.000 5.400000 0.11993228 Pl_0 1 Placebo_0 251 Kivitz 2002 2.000 4.450000 0.12534348 Pl_0 1 Placebo_0 252 Kivitz 2002 6.000 4.200000 0.13397271 Pl_0 1 Placebo_0 253 Kivitz 2002 12.000 4.150000 0.14364307 Pl_0 1 Placebo_0 254 Kivitz 2002 0.000 5.350000 0.12011743 Na_1000 2 Naproxen_1000 255 Kivitz 2002 2.000 3.950000 0.12308383 Na_1000 2 Naproxen_1000 256 Kivitz 2002 6.000 3.800000 0.12840184 Na_1000 2 Naproxen_1000 257 Kivitz 2002 12.000 3.700000 0.13427651 Na_1000 2 Naproxen_1000 258 Kivitz 2002 0.000 5.400000 0.12107291 Va_5 3 Valdecoxib_5 259 Kivitz 2002 2.000 4.100000 0.12407956 Va_5 3 Valdecoxib_5 260 Kivitz 2002 6.000 3.850000 0.12945933 Va_5 3 Valdecoxib_5 261 Kivitz 2002 12.000 3.800000 0.13543772 Va_5 3 Valdecoxib_5 262 Kivitz 2002 0.000 5.350000 0.12095716 Va_20 4 Valdecoxib_20 263 Kivitz 2002 2.000 3.900000 0.12456927 Va_20 4 Valdecoxib_20 264 Kivitz 2002 6.000 3.700000 0.12930072 Va_20 4 Valdecoxib_20 265 Kivitz 2002 12.000 3.700000 0.13516536 Va_20 4 Valdecoxib_20 266 Kivitz 2002 0.000 5.500000 0.11988167 Va_10 5 Valdecoxib_10 267 Kivitz 2002 2.000 3.950000 0.12302862 Va_10 5 Valdecoxib_10 268 Kivitz 2002 6.000 3.950000 0.12792257 Va_10 5 Valdecoxib_10 269 Kivitz 2002 12.000 3.950000 0.13378317 Va_10 5 Valdecoxib_10 270 Lehmann 2005 0.000 4.900000 0.07770287 Pl_0 1 Placebo_0 271 Lehmann 2005 2.000 4.350000 0.08237490 Pl_0 1 Placebo_0 272 Lehmann 2005 13.000 3.650000 0.09589396 Pl_0 1 Placebo_0 273 Lehmann 2005 0.000 5.100000 0.07880393 Ce_200 2 Celebrex_200 274 Lehmann 2005 2.000 3.850000 0.08116206 Ce_200 2 Celebrex_200 275 Lehmann 2005 13.000 3.400000 0.08923811 Ce_200 2 Celebrex_200 276 Lehmann 2005 0.000 4.950000 0.07782803 Lu_200 3 Lumiracoxib_200 277 Lehmann 2005 2.000 3.900000 0.08112612 Lu_200 3 Lumiracoxib_200 278 Lehmann 2005 13.000 3.350000 0.08920896 Lu_200 3 Lumiracoxib_200 279 Lehmann 2005 0.000 4.950000 0.07880393 Lu_100 4 Lumiracoxib_100 280 Lehmann 2005 2.000 3.750000 0.08124250 Lu_100 4 Lumiracoxib_100 281 Lehmann 2005 13.000 3.250000 0.08923133 Lu_100 4 Lumiracoxib_100 282 Leung 2002 0.000 6.870000 0.20939918 Pl_0 1 Placebo_0 283 Leung 2002 2.000 5.530000 0.23627637 Pl_0 1 Placebo_0 284 Leung 2002 4.000 5.400000 0.24560040 Pl_0 1 Placebo_0 285 Leung 2002 8.000 5.160000 0.25982124 Pl_0 1 Placebo_0 286 Leung 2002 12.000 5.340000 0.27087539 Pl_0 1 Placebo_0 287 Leung 2002 0.000 6.564000 0.11522885 Na_1000 2 Naproxen_1000 288 Leung 2002 2.000 3.974000 0.11677361 Na_1000 2 Naproxen_1000 289 Leung 2002 4.000 4.034000 0.11914814 Na_1000 2 Naproxen_1000 290 Leung 2002 8.000 4.034000 0.12366869 Na_1000 2 Naproxen_1000 291 Leung 2002 12.000 4.084000 0.12715119 Na_1000 2 Naproxen_1000 292 Leung 2002 0.000 6.491000 0.11198246 Et_60 3 Etoricoxib_60 293 Leung 2002 2.000 4.041000 0.11590711 Et_60 3 Etoricoxib_60 294 Leung 2002 4.000 4.021000 0.11857705 Et_60 3 Etoricoxib_60 295 Leung 2002 8.000 3.901000 0.12290712 Et_60 3 Etoricoxib_60 296 Leung 2002 12.000 3.801000 0.12652421 Et_60 3 Etoricoxib_60 297 Markenson 2005 0.000 6.130000 0.31002201 Pl_0 1 Placebo_0 298 Markenson 2005 2.142 5.830000 0.31002201 Pl_0 1 Placebo_0 299 Markenson 2005 4.286 5.720000 0.31002201 Pl_0 1 Placebo_0 300 Markenson 2005 6.429 5.940000 0.31002201 Pl_0 1 Placebo_0 301 Markenson 2005 8.571 5.980000 0.31002201 Pl_0 1 Placebo_0 302 Markenson 2005 12.857 5.980000 0.31002201 Pl_0 1 Placebo_0 303 Markenson 2005 0.000 6.310000 0.27995615 Ox_44 2 Oxycodone_44 304 Markenson 2005 2.142 4.830000 0.27995615 Ox_44 2 Oxycodone_44 305 Markenson 2005 4.286 5.020000 0.27995615 Ox_44 2 Oxycodone_44 306 Markenson 2005 6.429 4.760000 0.27995615 Ox_44 2 Oxycodone_44 307 Markenson 2005 8.571 4.720000 0.27995615 Ox_44 2 Oxycodone_44 308 Markenson 2005 12.857 4.940000 0.27995615 Ox_44 2 Oxycodone_44 309 McKenna 2001 0.000 5.350000 0.11667262 Pl_0 1 Placebo_0 310 McKenna 2001 6.000 5.350000 0.12868684 Pl_0 1 Placebo_0 311 McKenna 2001 0.000 5.300000 0.10987659 Ce_200 2 Celebrex_200 312 McKenna 2001 6.000 5.300000 0.12302332 Ce_200 2 Celebrex_200 313 Puopolo 2007 0.000 6.466000 0.16356491 Pl_0 1 Placebo_0 314 Puopolo 2007 2.000 5.236000 0.17148452 Pl_0 1 Placebo_0 315 Puopolo 2007 4.000 5.186000 0.17771766 Pl_0 1 Placebo_0 316 Puopolo 2007 8.000 4.686000 0.18879059 Pl_0 1 Placebo_0 317 Puopolo 2007 12.000 4.716000 0.19583685 Pl_0 1 Placebo_0 318 Puopolo 2007 0.000 6.646000 0.11544539 Et_30 2 Etoricoxib_30 319 Puopolo 2007 2.000 4.416000 0.11860337 Et_30 2 Etoricoxib_30 320 Puopolo 2007 4.000 4.146000 0.12123458 Et_30 2 Etoricoxib_30 321 Puopolo 2007 8.000 3.646000 0.12544008 Et_30 2 Etoricoxib_30 322 Puopolo 2007 12.000 3.656000 0.12905699 Et_30 2 Etoricoxib_30 323 Sawitzke 2010 0.000 4.790000 0.14954087 Pl_0 1 Placebo_0 324 Sawitzke 2010 4.000 3.420000 0.16328616 Pl_0 1 Placebo_0 325 Sawitzke 2010 8.000 3.080000 0.17919315 Pl_0 1 Placebo_0 326 Sawitzke 2010 16.000 2.790000 0.19864814 Pl_0 1 Placebo_0 327 Sawitzke 2010 24.000 2.700000 0.20921215 Pl_0 1 Placebo_0 328 Sawitzke 2010 0.000 4.660000 0.14429790 Ce_200 2 Celebrex_200 329 Sawitzke 2010 4.000 3.080000 0.15170564 Ce_200 2 Celebrex_200 330 Sawitzke 2010 8.000 2.630000 0.15982418 Ce_200 2 Celebrex_200 331 Sawitzke 2010 16.000 2.600000 0.17277095 Ce_200 2 Celebrex_200 332 Sawitzke 2010 24.000 2.140000 0.18297588 Ce_200 2 Celebrex_200 333 Schnitzer 2005_2 0.000 6.600000 0.16571813 Pl_0 1 Placebo_0 334 Schnitzer 2005_2 1.000 4.390000 0.17390525 Pl_0 1 Placebo_0 335 Schnitzer 2005_2 2.000 4.410000 0.17768641 Pl_0 1 Placebo_0 336 Schnitzer 2005_2 4.000 4.050000 0.18398436 Pl_0 1 Placebo_0 337 Schnitzer 2005_2 6.000 3.970000 0.18952849 Pl_0 1 Placebo_0 338 Schnitzer 2005_2 0.000 6.500000 0.15993856 Na_1000 2 Naproxen_1000 339 Schnitzer 2005_2 1.000 3.450000 0.16243804 Na_1000 2 Naproxen_1000 340 Schnitzer 2005_2 2.000 3.000000 0.16392544 Na_1000 2 Naproxen_1000 341 Schnitzer 2005_2 4.000 2.760000 0.16789523 Na_1000 2 Naproxen_1000 342 Schnitzer 2005_2 6.000 2.690000 0.17061128 Na_1000 2 Naproxen_1000 343 Schnitzer 2005_2 0.000 6.700000 0.15640983 Na_1500 3 Naproxcinod_1500 344 Schnitzer 2005_2 1.000 3.430000 0.16417310 Na_1500 3 Naproxcinod_1500 345 Schnitzer 2005_2 2.000 3.180000 0.16645459 Na_1500 3 Naproxcinod_1500 346 Schnitzer 2005_2 4.000 2.880000 0.16974660 Na_1500 3 Naproxcinod_1500 347 Schnitzer 2005_2 6.000 2.730000 0.17321634 Na_1500 3 Naproxcinod_1500 348 Schnitzer 2005_2 0.000 6.500000 0.16970563 Ro_25 4 Rofecoxib_25 349 Schnitzer 2005_2 1.000 3.320000 0.17658562 Ro_25 4 Rofecoxib_25 350 Schnitzer 2005_2 2.000 3.160000 0.17939738 Ro_25 4 Rofecoxib_25 351 Schnitzer 2005_2 4.000 2.970000 0.18349812 Ro_25 4 Rofecoxib_25 352 Schnitzer 2005_2 6.000 2.900000 0.18625935 Ro_25 4 Rofecoxib_25 353 Schnitzer 2005_2 0.000 6.600000 0.17111236 Na_750 5 Naproxcinod_750 354 Schnitzer 2005_2 1.000 3.330000 0.16997392 Na_750 5 Naproxcinod_750 355 Schnitzer 2005_2 2.000 2.950000 0.17160362 Na_750 5 Naproxcinod_750 356 Schnitzer 2005_2 4.000 2.840000 0.17541465 Na_750 5 Naproxcinod_750 357 Schnitzer 2005_2 6.000 2.790000 0.17898501 Na_750 5 Naproxcinod_750 358 Schnitzer 2005_2 0.000 6.700000 0.18336859 Na_250 6 Naproxcinod_250 359 Schnitzer 2005_2 1.000 4.550000 0.17227298 Na_250 6 Naproxcinod_250 360 Schnitzer 2005_2 2.000 4.170000 0.17410810 Na_250 6 Naproxcinod_250 361 Schnitzer 2005_2 4.000 4.140000 0.17815403 Na_250 6 Naproxcinod_250 362 Schnitzer 2005_2 6.000 3.990000 0.18131412 Na_250 6 Naproxcinod_250 363 Schnitzer 2010 0.000 7.215000 0.10649083 Pl_0 1 Placebo_0 364 Schnitzer 2010 2.000 5.265000 0.11319620 Pl_0 1 Placebo_0 365 Schnitzer 2010 6.000 4.945000 0.12136624 Pl_0 1 Placebo_0 366 Schnitzer 2010 13.000 4.655000 0.13216957 Pl_0 1 Placebo_0 367 Schnitzer 2010 0.000 7.101000 0.11400775 Na_1000 2 Naproxen_1000 368 Schnitzer 2010 2.000 3.871000 0.10996805 Na_1000 2 Naproxen_1000 369 Schnitzer 2010 6.000 3.551000 0.11460991 Na_1000 2 Naproxen_1000 370 Schnitzer 2010 13.000 3.331000 0.12044908 Na_1000 2 Naproxen_1000 371 Schnitzer 2010 0.000 7.316000 0.09844550 Na_1500 3 Naproxcinod_1500 372 Schnitzer 2010 2.000 4.016000 0.10918995 Na_1500 3 Naproxcinod_1500 373 Schnitzer 2010 6.000 3.546000 0.11374548 Na_1500 3 Naproxcinod_1500 374 Schnitzer 2010 13.000 3.596000 0.11998801 Na_1500 3 Naproxcinod_1500 375 Schnitzer 2010 0.000 7.358000 0.09927747 Na_750 4 Naproxcinod_750 376 Schnitzer 2010 2.000 4.628000 0.10666145 Na_750 4 Naproxcinod_750 377 Schnitzer 2010 6.000 4.118000 0.11133092 Na_750 4 Naproxcinod_750 378 Schnitzer 2010 13.000 3.918000 0.11741286 Na_750 4 Naproxcinod_750 379 Schnitzer 2011LUM 0.000 5.300000 0.07329841 Pl_0 1 Placebo_0 380 Schnitzer 2011LUM 4.000 4.420000 0.08359282 Pl_0 1 Placebo_0 381 Schnitzer 2011LUM 8.000 4.255000 0.08894068 Pl_0 1 Placebo_0 382 Schnitzer 2011LUM 13.000 4.140000 0.09407760 Pl_0 1 Placebo_0 383 Schnitzer 2011LUM 0.000 5.400000 0.07279126 Ce_200 2 Celebrex_200 384 Schnitzer 2011LUM 4.000 3.860000 0.08060813 Ce_200 2 Celebrex_200 385 Schnitzer 2011LUM 8.000 3.580000 0.08354665 Ce_200 2 Celebrex_200 386 Schnitzer 2011LUM 13.000 3.545000 0.08671550 Ce_200 2 Celebrex_200 387 Schnitzer 2011LUM 0.000 5.400000 0.07863926 Lu_100 3 Lumiracoxib_100 388 Schnitzer 2011LUM 4.000 3.880000 0.07981473 Lu_100 3 Lumiracoxib_100 389 Schnitzer 2011LUM 8.000 3.585000 0.08284601 Lu_100 3 Lumiracoxib_100 390 Schnitzer 2011LUM 13.000 3.585000 0.08591064 Lu_100 3 Lumiracoxib_100 391 Sheldon 2005 0.000 5.500000 0.07393263 Pl_0 1 Placebo_0 392 Sheldon 2005 13.000 4.350000 0.09856959 Pl_0 1 Placebo_0 393 Sheldon 2005 0.000 5.400000 0.08171819 Ce_200 2 Celebrex_200 394 Sheldon 2005 13.000 3.700000 0.08986899 Ce_200 2 Celebrex_200 395 Sheldon 2005 0.000 5.400000 0.07813401 Lu_100 3 Lumiracoxib_100 396 Sheldon 2005 13.000 3.600000 0.09022642 Lu_100 3 Lumiracoxib_100 397 Sheldon 2005 0.000 5.400000 0.08077908 Lu_NA 4 Lumiracoxib_NA 398 Sheldon 2005 13.000 3.550000 0.09065824 Lu_NA 4 Lumiracoxib_NA 399 Sowers 2005 0.000 4.800000 0.19003495 Na_1000 1 Naproxen_1000 400 Sowers 2005 6.000 3.480000 0.21001071 Na_1000 1 Naproxen_1000 401 Sowers 2005 12.000 3.340000 0.23997436 Na_1000 1 Naproxen_1000 402 Sowers 2005 0.000 4.280000 0.19002043 Ce_200 2 Celebrex_200 403 Sowers 2005 6.000 2.970000 0.19002043 Ce_200 2 Celebrex_200 404 Sowers 2005 12.000 2.780000 0.19996735 Ce_200 2 Celebrex_200 405 Sowers 2005 0.000 4.850000 0.19000576 Ro_25 3 Rofecoxib_25 406 Sowers 2005 6.000 3.360000 0.20001523 Ro_25 3 Rofecoxib_25 407 Sowers 2005 12.000 3.180000 0.22003416 Ro_25 3 Rofecoxib_25 408 Tannenbaum 2004 0.000 5.150000 0.09622504 Pl_0 1 Placebo_0 409 Tannenbaum 2004 2.000 4.450000 0.11095877 Pl_0 1 Placebo_0 410 Tannenbaum 2004 13.000 3.950000 0.12879815 Pl_0 1 Placebo_0 411 Tannenbaum 2004 0.000 5.050000 0.07523352 Ce_200 2 Celebrex_200 412 Tannenbaum 2004 2.000 3.850000 0.07727746 Ce_200 2 Celebrex_200 413 Tannenbaum 2004 13.000 3.500000 0.08489279 Ce_200 2 Celebrex_200 414 Tannenbaum 2004 0.000 5.000000 0.07446346 Lu_400 3 Lumiracoxib_400 415 Tannenbaum 2004 2.000 3.700000 0.07649130 Lu_400 3 Lumiracoxib_400 416 Tannenbaum 2004 13.000 3.400000 0.08413371 Lu_400 3 Lumiracoxib_400 417 Tannenbaum 2004 0.000 5.050000 0.07703435 Lu_200 4 Lumiracoxib_200 418 Tannenbaum 2004 2.000 3.750000 0.07698671 Lu_200 4 Lumiracoxib_200 419 Tannenbaum 2004 13.000 3.450000 0.08442820 Lu_200 4 Lumiracoxib_200 420 Williams 2001 0.000 5.300000 0.10007405 Pl_0 1 Placebo_0 421 Williams 2001 6.000 4.400000 0.10007405 Pl_0 1 Placebo_0 422 Williams 2001 0.000 5.050000 0.15008849 Ce_200 2 Celebrex_200 423 Williams 2001 6.000 3.750000 0.10016636 Ce_200 2 Celebrex_200 > > # Define network > network <- mb.network(osteopain, description="Osteoarthritis Dataset") Reference treatment is `Pl_0` Studies reporting change from baseline automatically identified from the data > > # Define network with different network reference treatment > network <- mb.network(osteopain, reference="Ce_200") Studies reporting change from baseline automatically identified from the data > > > # Using the alogliptin dataset > network <- mb.network(alog_pcfb, description="Alogliptin Dataset") Reference treatment is `placebo` Studies reporting change from baseline automatically identified from the data > > # Examine networks > print(network) description : [1] "Alogliptin Dataset" data.ab : studyID time treatment narm arm y se n clinicaltrialGov_ID agent 1 11 6 1 6 1 0.02 0.097 41 NCT00755846 alogliptin 2 11 6 2 6 2 -0.12 0.095 42 NCT00755846 alogliptin 3 11 6 3 6 3 -0.35 0.096 42 NCT00755846 alogliptin 4 11 6 4 6 4 -0.36 0.093 45 NCT00755846 alogliptin 5 11 6 5 6 5 -0.32 0.097 43 NCT00755846 alogliptin 6 11 6 6 6 6 -0.31 0.094 44 NCT00755846 alogliptin dose fupcount fups 1 0.00 1 2 2 6.25 1 2 3 12.50 1 2 4 25.00 1 2 5 50.00 1 2 6 100.00 1 2 [ reached 'max' / getOption("max.print") -- omitted 227 rows ] studyID : [1] "11" "1" "3" "2" "4" "5" "6" "7" "8" "9" "10" "14" "12" "13" cfb : [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE treatments : [1] "placebo" "alog_6.25" "alog_12.5" "alog_25" "alog_50" "alog_100" > plot(network) Error in loadNamespace(x) : there is no package called ‘scales’ Calls: plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Check: re-building of vignette outputs, Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘consistencychecking-3.Rmd’ using rmarkdown Quitting from lines 139-144 [unnamed-chunk-8] (consistencychecking-3.Rmd) Error: processing vignette 'consistencychecking-3.Rmd' failed with diagnostics: there is no package called 'RColorBrewer' --- failed re-building ‘consistencychecking-3.Rmd’ --- re-building ‘dataexploration-1.Rmd’ using rmarkdown Quitting from lines 72-77 [unnamed-chunk-1] (dataexploration-1.Rmd) Error: processing vignette 'dataexploration-1.Rmd' failed with diagnostics: there is no package called 'scales' --- failed re-building ‘dataexploration-1.Rmd’ --- re-building ‘mbnmatime-overview.Rmd’ using rmarkdown --- finished re-building ‘mbnmatime-overview.Rmd’ --- re-building ‘outputs-4.Rmd’ using rmarkdown Quitting from lines 88-99 [unnamed-chunk-5] (outputs-4.Rmd) Error: processing vignette 'outputs-4.Rmd' failed with diagnostics: there is no package called 'ggplot2' --- failed re-building ‘outputs-4.Rmd’ --- re-building ‘predictions-5.Rmd’ using rmarkdown Quitting from lines 105-106 [unnamed-chunk-5] (predictions-5.Rmd) Error: processing vignette 'predictions-5.Rmd' failed with diagnostics: there is no package called 'ggplot2' --- failed re-building ‘predictions-5.Rmd’ --- re-building ‘runmbnmatime-2.Rmd’ using rmarkdown Quitting from lines 284-287 [unnamed-chunk-11] (runmbnmatime-2.Rmd) Error: processing vignette 'runmbnmatime-2.Rmd' failed with diagnostics: there is no package called 'ggplot2' --- failed re-building ‘runmbnmatime-2.Rmd’ SUMMARY: processing the following files failed: ‘consistencychecking-3.Rmd’ ‘dataexploration-1.Rmd’ ‘outputs-4.Rmd’ ‘predictions-5.Rmd’ ‘runmbnmatime-2.Rmd’ Error: Vignette re-building failed. Execution halted