Package check result: ERROR Check: CRAN incoming feasibility, Result: NOTE Maintainer: ‘Hugo Pedder ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: MBNMA (3:59, 12:86) Pedder (14:27) al (14:37) et (14:34) CRAN repository db overrides: X-CRAN-Comment: Archived on 2024-11-20 as issues were not corrected despite reminders. Check: examples, Result: ERROR Running examples in ‘MBNMAtime-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: genspline > ### Title: Generates spline basis matrices for fitting to time-course > ### function > ### Aliases: genspline > > ### ** Examples > > x <- 0:100 > > genspline(x) 1 2 0 0.00 0.00 1 0.02 0.00 2 0.04 0.00 3 0.06 0.00 4 0.08 0.00 5 0.10 0.00 6 0.12 0.00 7 0.14 0.00 8 0.16 0.00 9 0.18 0.00 10 0.20 0.00 11 0.22 0.00 12 0.24 0.00 13 0.26 0.00 14 0.28 0.00 15 0.30 0.00 16 0.32 0.00 17 0.34 0.00 18 0.36 0.00 19 0.38 0.00 20 0.40 0.00 21 0.42 0.00 22 0.44 0.00 23 0.46 0.00 24 0.48 0.00 25 0.50 0.00 26 0.52 0.00 27 0.54 0.00 28 0.56 0.00 29 0.58 0.00 30 0.60 0.00 31 0.62 0.00 32 0.64 0.00 33 0.66 0.00 34 0.68 0.00 35 0.70 0.00 36 0.72 0.00 37 0.74 0.00 38 0.76 0.00 39 0.78 0.00 40 0.80 0.00 41 0.82 0.00 42 0.84 0.00 43 0.86 0.00 44 0.88 0.00 45 0.90 0.00 46 0.92 0.00 47 0.94 0.00 48 0.96 0.00 49 0.98 0.00 50 1.00 0.00 51 0.98 0.02 52 0.96 0.04 53 0.94 0.06 54 0.92 0.08 55 0.90 0.10 56 0.88 0.12 57 0.86 0.14 58 0.84 0.16 59 0.82 0.18 60 0.80 0.20 61 0.78 0.22 62 0.76 0.24 63 0.74 0.26 64 0.72 0.28 65 0.70 0.30 66 0.68 0.32 67 0.66 0.34 68 0.64 0.36 69 0.62 0.38 70 0.60 0.40 71 0.58 0.42 72 0.56 0.44 73 0.54 0.46 74 0.52 0.48 75 0.50 0.50 76 0.48 0.52 77 0.46 0.54 78 0.44 0.56 79 0.42 0.58 80 0.40 0.60 81 0.38 0.62 82 0.36 0.64 83 0.34 0.66 84 0.32 0.68 85 0.30 0.70 86 0.28 0.72 87 0.26 0.74 88 0.24 0.76 89 0.22 0.78 90 0.20 0.80 91 0.18 0.82 92 0.16 0.84 93 0.14 0.86 94 0.12 0.88 95 0.10 0.90 96 0.08 0.92 97 0.06 0.94 98 0.04 0.96 99 0.02 0.98 100 0.00 1.00 > > # Generate a quadratic B-spline with 1 equally spaced internal knot > genspline(x, spline="bs", nknots=1, degree=2) 1 2 3 0 0.0000 0.0000 0.0000 1 0.0394 0.0002 0.0000 2 0.0776 0.0008 0.0000 3 0.1146 0.0018 0.0000 4 0.1504 0.0032 0.0000 5 0.1850 0.0050 0.0000 6 0.2184 0.0072 0.0000 7 0.2506 0.0098 0.0000 8 0.2816 0.0128 0.0000 9 0.3114 0.0162 0.0000 10 0.3400 0.0200 0.0000 11 0.3674 0.0242 0.0000 12 0.3936 0.0288 0.0000 13 0.4186 0.0338 0.0000 14 0.4424 0.0392 0.0000 15 0.4650 0.0450 0.0000 16 0.4864 0.0512 0.0000 17 0.5066 0.0578 0.0000 18 0.5256 0.0648 0.0000 19 0.5434 0.0722 0.0000 20 0.5600 0.0800 0.0000 21 0.5754 0.0882 0.0000 22 0.5896 0.0968 0.0000 23 0.6026 0.1058 0.0000 24 0.6144 0.1152 0.0000 25 0.6250 0.1250 0.0000 26 0.6344 0.1352 0.0000 27 0.6426 0.1458 0.0000 28 0.6496 0.1568 0.0000 29 0.6554 0.1682 0.0000 30 0.6600 0.1800 0.0000 31 0.6634 0.1922 0.0000 32 0.6656 0.2048 0.0000 33 0.6666 0.2178 0.0000 34 0.6664 0.2312 0.0000 35 0.6650 0.2450 0.0000 36 0.6624 0.2592 0.0000 37 0.6586 0.2738 0.0000 38 0.6536 0.2888 0.0000 39 0.6474 0.3042 0.0000 40 0.6400 0.3200 0.0000 41 0.6314 0.3362 0.0000 42 0.6216 0.3528 0.0000 43 0.6106 0.3698 0.0000 44 0.5984 0.3872 0.0000 45 0.5850 0.4050 0.0000 46 0.5704 0.4232 0.0000 47 0.5546 0.4418 0.0000 48 0.5376 0.4608 0.0000 49 0.5194 0.4802 0.0000 50 0.5000 0.5000 0.0000 51 0.4802 0.5194 0.0004 52 0.4608 0.5376 0.0016 53 0.4418 0.5546 0.0036 54 0.4232 0.5704 0.0064 55 0.4050 0.5850 0.0100 56 0.3872 0.5984 0.0144 57 0.3698 0.6106 0.0196 58 0.3528 0.6216 0.0256 59 0.3362 0.6314 0.0324 60 0.3200 0.6400 0.0400 61 0.3042 0.6474 0.0484 62 0.2888 0.6536 0.0576 63 0.2738 0.6586 0.0676 64 0.2592 0.6624 0.0784 65 0.2450 0.6650 0.0900 66 0.2312 0.6664 0.1024 67 0.2178 0.6666 0.1156 68 0.2048 0.6656 0.1296 69 0.1922 0.6634 0.1444 70 0.1800 0.6600 0.1600 71 0.1682 0.6554 0.1764 72 0.1568 0.6496 0.1936 73 0.1458 0.6426 0.2116 74 0.1352 0.6344 0.2304 75 0.1250 0.6250 0.2500 76 0.1152 0.6144 0.2704 77 0.1058 0.6026 0.2916 78 0.0968 0.5896 0.3136 79 0.0882 0.5754 0.3364 80 0.0800 0.5600 0.3600 81 0.0722 0.5434 0.3844 82 0.0648 0.5256 0.4096 83 0.0578 0.5066 0.4356 84 0.0512 0.4864 0.4624 85 0.0450 0.4650 0.4900 86 0.0392 0.4424 0.5184 87 0.0338 0.4186 0.5476 88 0.0288 0.3936 0.5776 89 0.0242 0.3674 0.6084 90 0.0200 0.3400 0.6400 91 0.0162 0.3114 0.6724 92 0.0128 0.2816 0.7056 93 0.0098 0.2506 0.7396 94 0.0072 0.2184 0.7744 95 0.0050 0.1850 0.8100 96 0.0032 0.1504 0.8464 97 0.0018 0.1146 0.8836 98 0.0008 0.0776 0.9216 99 0.0002 0.0394 0.9604 100 0.0000 0.0000 1.0000 > > # Generate a natural spline with 2 knots at times of 10 and 50 > genspline(x, spline="ns", knots=c(10, 50)) 1 2 3 0 0.000000000 0.00000000 0.00000000 1 -0.014156667 0.03969467 -0.02551800 2 -0.028112452 0.07916287 -0.05089041 3 -0.041666470 0.11817812 -0.07597165 4 -0.054617838 0.15651395 -0.10061611 5 -0.066765674 0.19394389 -0.12467821 6 -0.077909094 0.23024146 -0.14801237 7 -0.087847215 0.26518020 -0.17047299 8 -0.096379153 0.29853363 -0.19191448 9 -0.103304027 0.33007527 -0.21219125 10 -0.108420951 0.35957866 -0.23115771 11 -0.111576347 0.38686644 -0.24869787 12 -0.112805841 0.41195769 -0.26481407 13 -0.112192366 0.43492063 -0.27953826 14 -0.109818852 0.45582345 -0.29290238 15 -0.105768230 0.47473438 -0.30493837 16 -0.100123432 0.49172161 -0.31567818 17 -0.092967387 0.50685335 -0.32515374 18 -0.084383028 0.52019781 -0.33339701 19 -0.074453285 0.53182320 -0.34043991 20 -0.063261088 0.54179771 -0.34631440 21 -0.050889370 0.55018957 -0.35105242 22 -0.037421061 0.55706697 -0.35468591 23 -0.022939091 0.56249812 -0.35724681 24 -0.007526393 0.56655123 -0.35876706 25 0.008734103 0.56929451 -0.35927861 26 0.025759467 0.57079616 -0.35881340 27 0.043466767 0.57112439 -0.35740338 28 0.061773071 0.57034740 -0.35508047 29 0.080595450 0.56853341 -0.35187663 30 0.099850972 0.56575061 -0.34782381 31 0.119456707 0.56206722 -0.34295393 32 0.139329723 0.55755144 -0.33729894 33 0.159387088 0.55227149 -0.33089080 34 0.179545874 0.54629555 -0.32376143 35 0.199723147 0.53969185 -0.31594278 36 0.219835978 0.53252859 -0.30746679 37 0.239801435 0.52487398 -0.29836542 38 0.259536588 0.51679622 -0.28867059 39 0.278958505 0.50836352 -0.27841425 40 0.297984256 0.49964408 -0.26762834 41 0.316530909 0.49070612 -0.25634481 42 0.334515533 0.48161784 -0.24459560 43 0.351855199 0.47244744 -0.23241264 44 0.368466973 0.46326314 -0.21982789 45 0.384267926 0.45413314 -0.20687329 46 0.399175127 0.44512564 -0.19358077 47 0.413105645 0.43630886 -0.17998228 48 0.425976548 0.42775100 -0.16610977 49 0.437704905 0.41952026 -0.15199517 50 0.448207787 0.41168486 -0.13767043 51 0.457420444 0.40430009 -0.12316276 52 0.465350863 0.39736958 -0.10848045 53 0.472025210 0.39088408 -0.09362707 54 0.477469654 0.38483430 -0.07860618 55 0.481710364 0.37921098 -0.06342134 56 0.484773507 0.37400485 -0.04807613 57 0.486685252 0.36920663 -0.03257410 58 0.487471767 0.36480705 -0.01691882 59 0.487159219 0.36079685 -0.00111385 60 0.485773778 0.35716676 0.01483724 61 0.483341610 0.35390749 0.03093090 62 0.479888885 0.35100979 0.04716355 63 0.475441771 0.34846438 0.06353163 64 0.470026435 0.34626198 0.08003158 65 0.463669046 0.34439334 0.09665984 66 0.456395772 0.34284917 0.11341283 67 0.448232780 0.34162021 0.13028700 68 0.439206240 0.34069719 0.14727879 69 0.429342320 0.34007084 0.16438462 70 0.418667187 0.33973188 0.18160094 71 0.407207009 0.33967104 0.19892417 72 0.394987955 0.33987906 0.21635076 73 0.382036194 0.34034666 0.23387715 74 0.368377892 0.34106457 0.25149976 75 0.354039218 0.34202352 0.26921504 76 0.339046341 0.34321424 0.28701941 77 0.323425429 0.34462747 0.30490933 78 0.307202649 0.34625392 0.32288121 79 0.290404170 0.34808433 0.34093151 80 0.273056159 0.35010942 0.35905664 81 0.255184786 0.35231993 0.37725306 82 0.236816218 0.35470659 0.39551719 83 0.217976624 0.35726012 0.41384548 84 0.198692171 0.35997126 0.43223435 85 0.178989027 0.36283072 0.45068025 86 0.158893362 0.36582925 0.46917961 87 0.138431342 0.36895757 0.48772886 88 0.117629137 0.37220642 0.50632445 89 0.096512914 0.37556651 0.52496280 90 0.075108841 0.37902858 0.54364036 91 0.053443087 0.38258336 0.56235356 92 0.031541819 0.38622157 0.58109883 93 0.009431207 0.38993395 0.59987262 94 -0.012862583 0.39371123 0.61867135 95 -0.035313382 0.39754414 0.63749147 96 -0.057895021 0.40142339 0.65632941 97 -0.080581333 0.40533973 0.67518160 98 -0.103346149 0.40928388 0.69404449 99 -0.126163302 0.41324658 0.71291450 100 -0.149006623 0.41721854 0.73178808 > > # Generate a piecewise linear spline with a knot at time=30 > genspline(x, spline="ls", knots=30) Error in loadNamespace(x) : there is no package called ‘lspline’ Calls: genspline ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Check: tests, Result: ERROR Running ‘testthat.R’ [0s/0s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(checkmate) > library(testthat) > library(MBNMAtime) Attaching package: 'MBNMAtime' The following object is masked from 'package:base': rank > library(igraph) Error in library(igraph) : there is no package called 'igraph' Execution halted Check: re-building of vignette outputs, Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘consistencychecking-3.Rmd’ using rmarkdown Quitting from lines 41-45 [unnamed-chunk-1] (consistencychecking-3.Rmd) Error: processing vignette 'consistencychecking-3.Rmd' failed with diagnostics: there is no package called 'igraph' --- failed re-building ‘consistencychecking-3.Rmd’ --- re-building ‘dataexploration-1.Rmd’ using rmarkdown Quitting from lines 72-77 [unnamed-chunk-1] (dataexploration-1.Rmd) Error: processing vignette 'dataexploration-1.Rmd' failed with diagnostics: there is no package called 'igraph' --- failed re-building ‘dataexploration-1.Rmd’ --- re-building ‘mbnmatime-overview.Rmd’ using rmarkdown --- finished re-building ‘mbnmatime-overview.Rmd’ --- re-building ‘outputs-4.Rmd’ using rmarkdown Quitting from lines 48-52 [unnamed-chunk-2] (outputs-4.Rmd) Error: processing vignette 'outputs-4.Rmd' failed with diagnostics: there is no package called 'crayon' --- failed re-building ‘outputs-4.Rmd’ --- re-building ‘predictions-5.Rmd’ using rmarkdown Quitting from lines 66-77 [unnamed-chunk-3] (predictions-5.Rmd) Error: processing vignette 'predictions-5.Rmd' failed with diagnostics: there is no package called 'crayon' --- failed re-building ‘predictions-5.Rmd’ --- re-building ‘runmbnmatime-2.Rmd’ using rmarkdown Quitting from lines 124-125 [unnamed-chunk-3] (runmbnmatime-2.Rmd) Error: processing vignette 'runmbnmatime-2.Rmd' failed with diagnostics: there is no package called 'crayon' --- failed re-building ‘runmbnmatime-2.Rmd’ SUMMARY: processing the following files failed: ‘consistencychecking-3.Rmd’ ‘dataexploration-1.Rmd’ ‘outputs-4.Rmd’ ‘predictions-5.Rmd’ ‘runmbnmatime-2.Rmd’ Error: Vignette re-building failed. Execution halted