downloading reverse dependencies ... downloading MSclassifR_0.4.0.tar.gz ... ok installing dependencies ‘Boruta’, ‘cp4p’, ‘MALDIquant’, ‘MALDIquantForeign’, ‘MALDIrppa’, ‘metap’, ‘mltools’, ‘vita’, ‘VSURF’ also installing the dependencies ‘readBrukerFlexData’, ‘readMzXmlData’, ‘TFisher’, ‘mutoss’ begin installing package ‘readBrukerFlexData’ begin installing package ‘readMzXmlData’ begin installing package ‘TFisher’ begin installing package ‘mutoss’ begin installing package ‘MALDIquant’ begin installing package ‘cp4p’ begin installing package ‘VSURF’ begin installing package ‘Boruta’ begin installing package ‘mltools’ begin installing package ‘vita’ * installing *source* package ‘readBrukerFlexData’ ... ** this is package ‘readBrukerFlexData’ version ‘1.9.3’ ** package ‘readBrukerFlexData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readBrukerFlexData) * installing *source* package ‘Boruta’ ... ** this is package ‘Boruta’ version ‘9.0.0’ ** package ‘Boruta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Boruta) * installing *source* package ‘VSURF’ ... ** this is package ‘VSURF’ version ‘1.2.0’ ** package ‘VSURF’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (VSURF) * installing *source* package ‘readMzXmlData’ ... ** this is package ‘readMzXmlData’ version ‘2.8.3’ ** package ‘readMzXmlData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readMzXmlData) * installing *source* package ‘MALDIquant’ ... ** this is package ‘MALDIquant’ version ‘1.22.3’ ** package ‘MALDIquant’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuRvKoV/R.INSTALL3fe8ff1cb61958/MALDIquant/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colMedians.c -o colMedians.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c localMaxima.c -o localMaxima.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lowerConvexHull.c -o lowerConvexHull.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c morphologicalFilters.c -o morphologicalFilters.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c snip.c -o snip.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o MALDIquant.so colMedians.o init.o localMaxima.o lowerConvexHull.o morphologicalFilters.o snip.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuRvKoV/R.INSTALL3fe8ff1cb61958/MALDIquant/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MALDIquant/00new/MALDIquant/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘approxfun’ from package ‘stats’ in package ‘MALDIquant’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MALDIquant) begin installing package ‘MALDIrppa’ begin installing package ‘MALDIquantForeign’ * installing *source* package ‘mltools’ ... ** this is package ‘mltools’ version ‘0.3.5’ ** package ‘mltools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mltools) * installing *source* package ‘TFisher’ ... ** this is package ‘TFisher’ version ‘0.2.0’ ** package ‘TFisher’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TFisher) * installing *source* package ‘MALDIrppa’ ... ** this is package ‘MALDIrppa’ version ‘1.1.0-3’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MALDIrppa) * installing *source* package ‘MALDIquantForeign’ ... ** this is package ‘MALDIquantForeign’ version ‘0.14.1’ ** package ‘MALDIquantForeign’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MALDIquantForeign) * installing *source* package ‘mutoss’ ... ** this is package ‘mutoss’ version ‘0.1-13’ ** package ‘mutoss’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mutoss) begin installing package ‘metap’ * installing *source* package ‘cp4p’ ... ** this is package ‘cp4p’ version ‘0.3.6’ ** package ‘cp4p’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cp4p) * installing *source* package ‘vita’ ... ** this is package ‘vita’ version ‘1.0.0’ ** package ‘vita’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfEgeX6/R.INSTALL3fe90957292e4d/vita/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rcpp_VarImpCVL.cpp -o Rcpp_VarImpCVL.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rcpp_compVarImp.cpp -o Rcpp_compVarImp.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o vita.so RcppExports.o Rcpp_VarImpCVL.o Rcpp_compVarImp.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfEgeX6/R.INSTALL3fe90957292e4d/vita/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-vita/00new/vita/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vita) * installing *source* package ‘metap’ ... ** this is package ‘metap’ version ‘1.12’ ** package ‘metap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metap) checking MALDIrppa_1.1.0-3.tar.gz ... checking MSclassifR_0.4.0.tar.gz ... Depends: Package: MALDIrppa Depends: R (>= 3.2.5), MALDIquant, signal, robustbase, lattice, waveslim Timings: user system elapsed MALDIrppa 78.806 5.233 86.928 Results: Check status summary: OK Source packages 1 Reverse depends 1 Check results summary: MALDIrppa ... OK rdepends_MSclassifR ... OK