* using log directory ‘/srv/hornik/tmp/CRAN_pretest/MAICtools.Rcheck’ * using R Under development (unstable) (2024-12-07 r87428) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.1 (1) Debian flang-new version 19.1.1 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘MAICtools/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MAICtools’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Xiao Qi ’ New submission Possibly misspelled words in DESCRIPTION: MAIC (3:58, 9:113) unanchored (9:63) The Title field should be in title case. Current version is: ‘Performing matched-adjusted indirect comparisons (MAIC)’ In title case that is: ‘Performing Matched-Adjusted Indirect Comparisons (MAIC)’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MAICtools’ can be installed ... [6s/6s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/9s] NOTE anchored_maic: no visible binding for global variable ‘TRT’ anchored_maic: no visible binding for global variable ‘STUDY’ anchored_maic: no visible binding for global variable ‘wt’ anchored_maic : estimate_itc: no visible binding for global variable ‘log_coef’ anchored_maic : estimate_itc: no visible binding for global variable ‘log_coef_se’ anchored_maic : estimate_itc: no visible global function definition for ‘:=’ anchored_maic : estimate_itc: no visible binding for global variable ‘lower’ anchored_maic : estimate_itc: no visible binding for global variable ‘upper’ anchored_maic : estimate_itc: no visible binding for global variable ‘param’ anchored_maic : estimate_itc: no visible binding for global variable ‘type’ anchored_maic : estimate_itc: no visible binding for global variable ‘effects’ anchored_maic: no visible binding for global variable ‘.’ anchored_maic: no visible global function definition for ‘as.formula’ anchored_maic: no visible binding for global variable ‘term’ anchored_maic: no visible binding for global variable ‘estimate’ anchored_maic: no visible binding for global variable ‘std.error’ check_matching: no visible binding for global variable ‘TRT’ check_matching: no visible binding for global variable ‘STUDY’ check_matching: no visible binding for global variable ‘N’ check_matching: no visible binding for global variable ‘wt’ check_matching: no visible binding for global variable ‘intervention_n’ check_matching: no visible binding for global variable ‘intervention_ess’ check_matching: no visible global function definition for ‘starts_with’ check_matching: no visible binding for global variable ‘src’ check_matching: no visible binding for global variable ‘total’ check_matching : cal_mean_binary: no visible global function definition for ‘across’ check_matching : cal_mean_binary: no visible global function definition for ‘all_of’ check_matching: no visible global function definition for ‘:=’ check_matching: no visible global function definition for ‘all_of’ check_matching: no visible binding for global variable ‘p’ check_matching: no visible binding for global variable ‘n’ check_matching: no visible binding for global variable ‘type’ check_matching: no visible binding for global variable ‘variable’ check_matching: no visible binding for global variable ‘statistic’ check_matching: no visible binding for global variable ‘value’ check_matching : cal_mean_continuous: no visible global function definition for ‘across’ check_matching : cal_mean_continuous: no visible global function definition for ‘all_of’ check_matching: no visible binding for global variable ‘.data’ check_matching2wider: no visible binding for global variable ‘TRT’ check_matching2wider: no visible binding for global variable ‘statistic’ check_matching2wider: no visible binding for global variable ‘type’ check_matching2wider: no visible binding for global variable ‘variable’ check_matching2wider: no visible binding for global variable ‘src’ check_matching2wider: no visible binding for global variable ‘category’ check_matching2wider: no visible binding for global variable ‘value’ check_matching2wider: no visible binding for global variable ‘adj’ check_matching2wider: no visible binding for global variable ‘res’ check_matching2wider: no visible binding for global variable ‘grp’ estimate_ess: no visible binding for global variable ‘TRT’ estimate_ess: no visible binding for global variable ‘STUDY’ estimate_ess: no visible binding for global variable ‘N’ estimate_ess: no visible binding for global variable ‘wt’ estimate_ess: no visible global function definition for ‘:=’ estimate_ess : : no visible global function definition for ‘:=’ estimate_ess: no visible binding for global variable ‘.data’ estimate_weights: no visible binding for global variable ‘TRT’ estimate_weights: no visible binding for global variable ‘STUDY’ estimate_weights : process_weights: no visible global function definition for ‘:=’ estimate_weights : process_weights: no visible binding for global variable ‘.data’ estimate_weights : process_weights: no visible binding for global variable ‘wt’ estimate_weights: no visible global function definition for ‘:=’ estimate_weights: no visible binding for global variable ‘.data’ hist_weights: no visible binding for global variable ‘TRT’ hist_weights: no visible binding for global variable ‘wt’ hist_weights: no visible binding for global variable ‘wt_rs’ hist_weights: no visible binding for global variable ‘value’ summarize_weights: no visible binding for global variable ‘TRT’ summarize_weights: no visible binding for global variable ‘wt’ summarize_weights: no visible binding for global variable ‘wt_rs’ summarize_weights: no visible global function definition for ‘sd’ summarize_weights: no visible global function definition for ‘median’ summarize_weights: no visible global function definition for ‘quantile’ summarize_weights: no visible binding for global variable ‘stat’ summarize_weights: no visible binding for global variable ‘value’ unanchored_kmplot: no visible binding for global variable ‘ARM’ unanchored_kmplot: no visible binding for global variable ‘wt’ unanchored_kmplot: no visible global function definition for ‘!<-’ unanchored_kmplot: no visible global function definition for ‘as.formula’ unanchored_maic: no visible binding for global variable ‘ARM’ unanchored_maic: no visible binding for global variable ‘wt’ unanchored_maic: no visible global function definition for ‘as.formula’ unanchored_maic: no visible binding for global variable ‘exp(coef)’ unanchored_maic: no visible global function definition for ‘:=’ unanchored_maic: no visible global function definition for ‘confint’ unanchored_maic: no visible binding for global variable ‘term’ unanchored_maic: no visible binding for global variable ‘estimate’ unanchored_maic: no visible binding for global variable ‘conf.low’ unanchored_maic: no visible binding for global variable ‘conf.high’ unanchored_maic_bootstrap : bootstrap_func: no visible global function definition for ‘relevel’ unanchored_maic_bootstrap : bootstrap_func: no visible binding for global variable ‘ARM’ unanchored_maic_bootstrap : bootstrap_func: no visible binding for global variable ‘wt’ unanchored_maic_bootstrap : bootstrap_func: no visible global function definition for ‘as.formula’ unanchored_maic_bootstrap: no visible global function definition for ‘abline’ unanchored_maic_bootstrap: no visible global function definition for ‘quantile’ unanchored_maic_bootstrap: no visible global function definition for ‘recordPlot’ Undefined global functions or variables: !<- . .data := ARM N STUDY TRT abline across adj all_of as.formula category conf.high conf.low confint effects estimate exp(coef) grp intervention_ess intervention_n log_coef log_coef_se lower median n p param quantile recordPlot relevel res sd src starts_with stat statistic std.error term total type upper value variable wt wt_rs Consider adding importFrom("grDevices", "recordPlot") importFrom("graphics", "abline") importFrom("stats", "as.formula", "confint", "effects", "median", "quantile", "relevel", "sd") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [4s/4s] OK * checking PDF version of manual ... [4s/4s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character ≥ (U+2265) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... NOTE Found the following files/directories: ‘MAICtools-manual.tex’ * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING, 3 NOTEs