* using log directory ‘/srv/hornik/tmp/CRAN/MAGMA.R.Rcheck’ * using R Under development (unstable) (2023-12-14 r85685) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.5 (1) Debian flang-new version 17.0.5 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘MAGMA.R/DESCRIPTION’ ... OK * this is package ‘MAGMA.R’ version ‘1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Julian Urban ’ New submission Possibly misspelled words in DESCRIPTION: MAtching (2:19) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MAGMA.R’ can be installed ... [7s/7s] WARNING Found the following significant warnings: Warning: replacing previous import ‘ggplot2::%+%’ by ‘psych::%+%’ when loading ‘MAGMA.R’ Warning: replacing previous import ‘ggplot2::alpha’ by ‘psych::alpha’ when loading ‘MAGMA.R’ Warning: replacing previous import ‘foreach::when’ by ‘purrr::when’ when loading ‘MAGMA.R’ Warning: replacing previous import ‘flextable::compose’ by ‘purrr::compose’ when loading ‘MAGMA.R’ Warning: replacing previous import ‘foreach::accumulate’ by ‘purrr::accumulate’ when loading ‘MAGMA.R’ Warning: replacing previous import ‘dplyr::lag’ by ‘stats::lag’ when loading ‘MAGMA.R’ Warning: replacing previous import ‘dplyr::filter’ by ‘stats::filter’ when loading ‘MAGMA.R’ Warning: replacing previous import ‘janitor::chisq.test’ by ‘stats::chisq.test’ when loading ‘MAGMA.R’ Warning: replacing previous import ‘janitor::fisher.test’ by ‘stats::fisher.test’ when loading ‘MAGMA.R’ See ‘/srv/hornik/tmp/CRAN/MAGMA.R.Rcheck/00install.out’ for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [2s/2s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s/11s] NOTE J_group_size: no visible binding for global variable ‘N’ MAGMA: no visible binding for global variable ‘group_id’ MAGMA: no visible binding for global variable ‘ID’ MAGMA: no visible binding for global variable ‘weight’ MAGMA_exact: no visible binding for global variable ‘group_id’ MAGMA_exact: no visible binding for global variable ‘ID’ MAGMA_exact: no visible binding for global variable ‘weight’ Plot_MAGMA: no visible binding for global variable ‘N’ Plot_MAGMA: no visible binding for global variable ‘value’ Table_MAGMA: no visible binding for global variable ‘.’ Table_MAGMA: no visible binding for global variable ‘n_per_group’ cohen_d: no visible binding for global variable ‘mean_diff’ cohen_d: no visible binding for global variable ‘pooled_sd’ cohen_d: no visible binding for global variable ‘d’ distance_estimator: no visible binding for global variable ‘inp’ initial_unbalance: no visible binding for global variable ‘IV’ Undefined global functions or variables: . ID IV N d group_id inp mean_diff n_per_group pooled_sd value weight * checking Rd files ... [0s/0s] NOTE checkRd: (-1) MAGMA_sim_data.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:12-13: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:14-15: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:16-17: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:18-19: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:20-21: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) MAGMA_sim_data.Rd:32: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [3s/3s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [30s/37s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING, 3 NOTEs