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Type 'q()' to quit R. > library(testthat) > library(Luminescence) Welcome to the R package Luminescence version 0.9.24 [Built: 2024-06-07 15:45:05 UTC] A fluvially transported quartz grain at night: 'Always look at the bright side of life.' > > test_check("Luminescence") [calc_CosmicDoseRate] --------------------------------------------------------- depth (m) : 2.78 density (g cm^-3) : 1.7 latitude (N deg.) : 38.06451 longitude (E deg.) : 1.49646 altitude (m) : 364 --------------------------------------------------------- total absorber (g cm^-2) : 472.6 cosmic dose rate (Gy ka^-1) : 0.1518 [@sea-level & 55 deg. N G.lat] geomagnetic latitude (deg.) : 41.1 cosmic dose rate (Gy ka^-1) : 0.161 +- 0.0161 [corrected] --------------------------------------------------------- [calc_HomogeneityTest()] --------------------------------- n: 7 --------------------------------- mu: 3.7727 G-value: 19.2505 Degrees of freedom: 6 P-value: 0.0038 --------------------------------- [fit_LMCurve] >> Background subtracted (method="polynomial")! [fit_LMCurve()] Fitting was done using a 3-component function: xm1 xm2 xm3 Im1 Im2 Im3 49.00634 204.39749 1591.66438 169.43979 23.00769 405.46174 (equation used for fitting according Kitis & Pagonis, 2008) ------------------------------------------------------------------------------ (1) Corresponding values according the equation in Bulur, 1996 for b and n0: b1 = 1.665542e+00 +/- NA n01 = 1.369036e+04 +/- NA b2 = 9.574341e-02 +/- NA n02 = 7.753465e+03 +/- NA b3 = 1.578909e-03 +/- NA n03 = 1.064017e+06 +/- NA cs from component.1 = 1.955e-17 cm^2 >> relative: 1 cs from component.2 = 1.124e-18 cm^2 >> relative: 0.0575 cs from component.3 = 1.854e-20 cm^2 >> relative: 9e-04 (stimulation intensity value used for calculation: 8.517726e+16 1/s 1/cm^2) (errors quoted as 1-sigma uncertainties) ------------------------------------------------------------------------------ pseudo-R^2 = 0.9437 [fit_LMCurve] >> Background subtracted (method="polynomial")! [fit_LMCurve()] Fitting was done using a 3-component function: xm.1 xm.2 xm.3 Im.1 Im.2 Im.3 49.00509 204.34969 1591.66300 169.43653 23.01176 405.46223 (equation used for fitting according Kitis & Pagonis, 2008) ------------------------------------------------------------------------------ (1) Corresponding values according the equation in Bulur, 1996 for b and n0: b1 = 1.665626e+00 +/- NA n01 = 1.368975e+04 +/- NA b2 = 9.57882e-02 +/- NA n02 = 7.753022e+03 +/- NA b3 = 1.578911e-03 +/- NA n03 = 1.064017e+06 +/- NA cs from component.1 = 1.955e-17 cm^2 >> relative: 1 cs from component.2 = 1.125e-18 cm^2 >> relative: 0.0575 cs from component.3 = 1.854e-20 cm^2 >> relative: 9e-04 (stimulation intensity value used for calculation: 8.517726e+16 1/s 1/cm^2) (errors quoted as 1-sigma uncertainties) ------------------------------------------------------------------------------ pseudo-R^2 = 0.9437 [ FAIL 0 | WARN 0 | SKIP 193 | PASS 16 ] ══ Skipped tests (193) ═════════════════════════════════════════════════════════ • On CRAN (193): 'test_Analyse_SAROSLdata.R:2:3', 'test_CW2pX.R:6:3', 'test_CW2pX.R:30:3', 'test_PSL2RisoeBINfiledata.R:2:3', 'test_RLum.Analysis-class.R:2:3', 'test_RLum.Data.Curve.R:2:3', 'test_RLum.Data.Image.R:2:3', 'test_RLum.Data.Spectrum.R:2:3', 'test_RLum.R:2:3', 'test_RisoeBINfileData-class.R:2:3', 'test_Second2Gray.R:7:3', 'test_Second2Gray.R:14:3', 'test_analyse_Al2O3C_CrossTalk.R:3:3', 'test_analyse_Al2O3C_ITC.R:3:3', 'test_analyse_Al2O3C_Measurement.R:3:3', 'test_analyse_FadingMeasurement.R:2:3', 'test_analyse_FadingMeasurement.R:46:3', 'test_analyse_IRSARRF.R:2:3', 'test_analyse_IRSARRF.R:46:3', 'test_analyse_IRSARRF.R:90:3', 'test_analyse_IRSARRF.R:105:3', 'test_analyse_SARCWOSL.R:22:3', 'test_analyse_SARCWOSL.R:34:3', 'test_analyse_SARCWOSL.R:49:3', 'test_analyse_SARCWOSL.R:62:3', 'test_analyse_SARCWOSL.R:77:3', 'test_analyse_SARCWOSL.R:373:3', 'test_analyse_SARTL.R:3:3', 'test_analyse_baSAR.R:3:3', 'test_analyse_pIRIRSequence.R:36:5', 'test_analyse_pIRIRSequence.R:48:4', 'test_analyse_portableOSL.R:2:5', 'test_analyse_portableOSL.R:168:3', 'test_apply_CosmicRayRemoval.R:2:3', 'test_apply_EfficiencyCorrection.R:2:3', 'test_as_latex_table.R:2:3', 'test_bin_RLumData.R:11:3', 'test_bin_RLumData.R:20:3', 'test_calc_AliquotSize.R:10:3', 'test_calc_AliquotSize.R:32:3', 'test_calc_AliquotSize.R:43:3', 'test_calc_AliquotSize.R:56:3', 'test_calc_AverageDose.R:8:3', 'test_calc_AverageDose.R:17:3', 'test_calc_CentralDose.R:12:3', 'test_calc_CentralDose.R:25:3', 'test_calc_CentralDose.R:37:3', 'test_calc_CobbeDoseRate.R:2:3', 'test_calc_CommonDose.R:5:3', 'test_calc_CommonDose.R:14:3', 'test_calc_CosmicDoseRate.R:7:3', 'test_calc_CosmicDoseRate.R:16:3', 'test_calc_CosmicDoseRate.R:37:3', 'test_calc_FadingCorr.R:12:3', 'test_calc_FadingCorr.R:44:3', 'test_calc_FastRatio.R:6:3', 'test_calc_FastRatio.R:15:3', 'test_calc_FiniteMixture.R:2:3', 'test_calc_FuchsLang2001.R:2:3', 'test_calc_HomogeneityTest.R:11:3', 'test_calc_HomogeneityTest.R:20:3', 'test_calc_Huntley2006.R:24:3', 'test_calc_Huntley2006.R:50:3', 'test_calc_IEU.R:8:3', 'test_calc_IEU.R:64:3', 'test_calc_IEU.R:73:3', 'test_calc_Lamothe2003.R:2:3', 'test_calc_Lamothe2003.R:74:3', 'test_calc_MaxDose.R:9:3', 'test_calc_MaxDose.R:18:3', 'test_calc_MinDose.R:8:3', 'test_calc_MinDose.R:17:3', 'test_calc_OSLLxTxRatio.R:10:3', 'test_calc_OSLLxTxRatio.R:19:3', 'test_calc_OSLLxTxRatio.R:52:3', 'test_calc_OSLLxTxRatio.R:101:3', 'test_calc_OSLLxTxRatio.R:203:3', 'test_calc_OSLLxTxRatio.R:246:3', 'test_calc_OSLLxTxRatio.R:302:3', 'test_calc_OSLLxTxRatio.R:321:3', 'test_calc_SourceDoseRate.R:8:3', 'test_calc_SourceDoseRate.R:57:3', 'test_calc_SourceDoseRate.R:66:3', 'test_calc_Statistics.R:12:3', 'test_calc_Statistics.R:35:3', 'test_calc_Statistics.R:49:3', 'test_calc_Statistics.R:68:3', 'test_calc_TLLxTxRatio.R:2:3', 'test_calc_ThermalLifetime.R:26:3', 'test_calc_ThermalLifetime.R:35:3', 'test_calc_ThermalLifetime.R:62:3', 'test_calc_ThermalLifetime.R:69:3', 'test_calc_ThermalLifetime.R:79:3', 'test_calc_WodaFuchs2008.R:2:3', 'test_calc_gSGC.R:11:3', 'test_calc_gSGC.R:26:3', 'test_calc_gSGC.R:45:3', 'test_calc_gSGC.R:54:3', 'test_calc_gSGC_feldspar.R:2:3', 'test_combine_De_Dr.R:2:3', 'test_convert_Activity2Concentration.R:2:3', 'test_convert_Concentration2DoseRate.R:2:3', 'test_convert_PSL2CSV.R:2:3', 'test_convert_RLum2Risoe.BINfileData.R:2:3', 'test_convert_RLum2Risoe.BINfileData.R:11:3', 'test_convert_SG2MG.R:2:3', 'test_convert_Wavelength2Energy.R:2:3', 'test_convert_XYSG2CSV.R:2:3', 'test_extract_IrradiationTimes.R:2:3', 'test_extract_ROI.R:2:3', 'test_fit_CWCurve.R:2:3', 'test_fit_CWCurve.R:18:3', 'test_fit_EmissionSpectra.R:2:3', 'test_fit_LMCurve.R:12:3', 'test_fit_LMCurve.R:30:3', 'test_fit_LMCurve.R:42:3', 'test_fit_LMCurve.R:63:3', 'test_fit_LMCurve.R:72:3', 'test_fit_OSLLifeTimes.R:9:3', 'test_fit_SurfaceExposure.R:12:3', 'test_fit_SurfaceExposure.R:21:3', 'test_fit_SurfaceExposure.R:34:3', 'test_fit_SurfaceExposure.R:47:3', 'test_fit_SurfaceExposure.R:56:3', 'test_fit_SurfaceExposure.R:69:3', 'test_fit_SurfaceExposure.R:79:3', 'test_fit_SurfaceExposure.R:93:3', 'test_fit_SurfaceExposure.R:101:3', 'test_fit_SurfaceExposure.R:108:3', 'test_fit_ThermalQuenching.R:13:3', 'test_get_RLum.R:13:3', 'test_get_RLum.R:29:3', 'test_github.R:9:3', 'test_github.R:24:3', 'test_github.R:39:3', 'test_import_Data.R:2:3', 'test_internals.R:2:3', 'test_merge_RLum.R:2:3', 'test_merge_RLumDataCurve.R:2:3', 'test_merge_RLumResults.R:2:3', 'test_merge_RisoeBINfileData.R:3:3', 'test_methods_DRAC.R:3:3', 'test_methods_S3.R:2:3', 'test_names_RLum.R:2:3', 'test_plot_AbanicoPlot.R:2:3', 'test_plot_AbanicoPlot.R:167:3', 'test_plot_DRCSummary.R:2:3', 'test_plot_DRCSummary.R:13:3', 'test_plot_DetPlot.R:2:3', 'test_plot_Functions.R:2:3', 'test_plot_Functions.R:137:3', 'test_plot_GrowthCurve.R:2:3', 'test_plot_OSLAgeSummary.R:2:3', 'test_plot_RLum.Analysis.R:2:3', 'test_plot_RLum.Data.Curve.R:2:3', 'test_plot_RLum.Data.Image.R:2:3', 'test_plot_RLum.Data.Spectrum.R:2:3', 'test_plot_RLum.R:2:3', 'test_plot_ROI.R:2:3', 'test_plot_RadialPlot.R:2:3', 'test_read_BIN2R.R:2:3', 'test_read_Daybreak2R.R:2:3', 'test_read_PSL2R.R:2:3', 'test_read_RF2R.R:2:3', 'test_read_SPE2R.R:2:3', 'test_read_TIFF2R.R:2:3', 'test_read_XSYG2R.R:2:3', 'test_replicate_RLum.R:2:3', 'test_report_RLum.R:2:3', 'test_scale_GammaDose.R:11:3', 'test_scale_GammaDose.R:20:3', 'test_scale_GammaDose.R:34:3', 'test_scale_GammaDose.R:43:3', 'test_scale_GammaDose.R:57:3', 'test_scale_GammaDose.R:66:3', 'test_scale_GammaDose.R:84:3', 'test_smooth_RLum.R:13:3', 'test_smooth_RLum.R:33:2', 'test_structure_RLum.R:2:3', 'test_subset_RLum.R:3:3', 'test_subset_SingleGrainData.R:2:3', 'test_template_DRAC.R:3:3', 'test_trim_RLum.Data.R:2:3', 'test_trim_RLum.Data.R:68:3', 'test_trim_RLum.Data.R:84:3', 'test_trim_RLum.Data.R:98:3', 'test_trim_RLum.Data.R:144:3', 'test_use_DRAC.R:3:3', 'test_verify_SingleGrainData.R:2:3', 'test_write_R2BIN.R:2:3', 'test_write_R2TIFF.R:2:3', 'test_write_RLum2CSV.R:2:3', 'test_zzz.R:2:3' [ FAIL 0 | WARN 0 | SKIP 193 | PASS 16 ] > > proc.time() user system elapsed 18.46 2.04 20.54