* using log directory ‘/srv/hornik/tmp/CRAN/LipinskiFilters.Rcheck’
* using R Under development (unstable) (2024-02-22 r85974)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘LipinskiFilters/DESCRIPTION’ ... OK
* this is package ‘LipinskiFilters’ version ‘1.0.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [1s/2s] NOTE
Maintainer: ‘Oche Ambrose George <ocheab1@gmail.com>’

New submission

Non-FOSS package license (`use_mit_license()`, `use_gpl3_license()` or friends to pick a
license)

Possibly misspelled words in DESCRIPTION:
  ALogP (7:223)
  Lipinski (7:18, 7:52)
  Lipinski's (2:31)
  acceptors (7:208)

The Title field should be in title case. Current version is:
‘Computes and visualize Lipinski's parameters’
In title case that is:
‘Computes and Visualize Lipinski's Parameters’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LipinskiFilters’ can be installed ... [4s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... WARNING
Non-standard license specification:
  `use_mit_license()`, `use_gpl3_license()` or friends to pick a
  license
Standardizable: FALSE
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘extdata’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  ‘cowplot’ ‘ggplot2’ ‘itertools’ ‘rcdk’
'library' or 'require' calls in package code:
  ‘cowplot’ ‘ggplot2’ ‘itertools’ ‘rcdk’ ‘utils’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/5s] NOTE
File ‘LipinskiFilters/R/zzz.R’:
  .onLoad calls:
    library(cowplot)
    library(rcdk)
    library(itertools)
    library(utils)
    library(ggplot2)

Package startup functions should not change the search path.
See section ‘Good practice’ in '?.onAttach'.

create_lipinski_plots: no visible binding for global variable ‘MW’
create_lipinski_plots: no visible binding for global variable ‘nHBDon’
create_lipinski_plots: no visible binding for global variable ‘nHBAcc’
create_lipinski_plots: no visible binding for global variable ‘ALogP’
create_lipinski_plots: no visible binding for global variable ‘Pass’
Undefined global functions or variables:
  ALogP MW Pass nHBAcc nHBDon
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  ‘mols’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s/1s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 WARNINGs, 3 NOTEs