* using log directory ‘/srv/hornik/tmp/CRAN/LatentSNA.Rcheck’
* using R Under development (unstable) (2024-06-17 r86764)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.5 (2)
    Debian flang-new version 18.1.5 (2)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘LatentSNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LatentSNA’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Selena Wang <selewang@iu.edu>’

New submission

Possibly misspelled words in DESCRIPTION:
  Neuroimaging (8:14)

Unknown, possibly misspelled, fields in DESCRIPTION:
  ‘(<doi’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LatentSNA’ can be installed ... [3s/3s] WARNING
Found the following significant warnings:
  Warning: replacing previous import ‘MASS::select’ by ‘dplyr::select’ when loading ‘LatentSNA’
  Warning: replacing previous import ‘dplyr::rename’ by ‘plyr::rename’ when loading ‘LatentSNA’
  Warning: replacing previous import ‘dplyr::count’ by ‘plyr::count’ when loading ‘LatentSNA’
  Warning: replacing previous import ‘dplyr::failwith’ by ‘plyr::failwith’ when loading ‘LatentSNA’
  Warning: replacing previous import ‘dplyr::id’ by ‘plyr::id’ when loading ‘LatentSNA’
  Warning: replacing previous import ‘dplyr::summarize’ by ‘plyr::summarize’ when loading ‘LatentSNA’
  Warning: replacing previous import ‘dplyr::summarise’ by ‘plyr::summarise’ when loading ‘LatentSNA’
  Warning: replacing previous import ‘dplyr::mutate’ by ‘plyr::mutate’ when loading ‘LatentSNA’
  Warning: replacing previous import ‘dplyr::desc’ by ‘plyr::desc’ when loading ‘LatentSNA’
  Warning: replacing previous import ‘dplyr::arrange’ by ‘plyr::arrange’ when loading ‘LatentSNA’
  Warning: replacing previous import ‘dplyr::lag’ by ‘stats::lag’ when loading ‘LatentSNA’
  Warning: replacing previous import ‘dplyr::filter’ by ‘stats::filter’ when loading ‘LatentSNA’
See ‘/srv/hornik/tmp/CRAN/LatentSNA.Rcheck/00install.out’ for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Dependence on R version ‘4.3.2’ not with patchlevel 0
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘LatentSNA_0.1.0.pdf’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/4s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... WARNING
Rd files with duplicated alias 'latentSNA':
  ‘latentSNA.Rd’ ‘latentSNA_PACKAGE.Rd’
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'rXi.Rd':
rXi
  Code: function(H, beta, Alpha, Theta, mxi, Sigmaxi, s1)
  Docs: function(H, beta, Alpha, Theta, mxi, Sigmaxi, s1 = 1)
  Mismatches in argument default values:
    Name: 's1' Code:  Docs: 1

Codoc mismatches from Rd file 'rs1_b.Rd':
rs1_b
  Code: function(Tm, offset = offset, nu1 = NULL, s10 = NULL)
  Docs: function(Tm, offset = 0, nu1 = NULL, s10 = NULL)
  Mismatches in argument default values:
    Name: 'offset' Code: offset Docs: 0

* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'rs1_b.Rd'
  ‘offset’

Undocumented arguments in Rd file 'rs2.Rd'
  ‘offset’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] ERROR
Running examples in ‘LatentSNA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: latentSNA
> ### Title: Attribute informed brain connectivity
> ### Aliases: latentSNA
> 
> ### ** Examples
> 
> attach(X)
Error in attach(X) : all elements of a list must be named
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 4 WARNINGs, 3 NOTEs