* using log directory ‘/srv/hornik/tmp/CRAN/LaMa.Rcheck’
* using R Under development (unstable) (2024-05-27 r86634)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.4 (1)
    Debian flang-new version 18.1.4 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘LaMa/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LaMa’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/10s] NOTE
Maintainer: ‘Jan-Ole Koslik <jan-ole.koslik@uni-bielefeld.de>’

New submission

Possibly misspelled words in DESCRIPTION:
  HMMs (12:70)
  HSMMs (13:30)
  SSMs (13:58)

Found the following (possibly) invalid URLs:
  URL: https://github.com/janoleko/LaMa/tree/main/vignettes/pdfs/Continuous_time_HMMs.pdf (moved to https://github.com/janoleko/LaMa/blob/main/vignettes/pdfs/Continuous_time_HMMs.pdf)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://github.com/janoleko/LaMa/tree/main/vignettes/pdfs/HSMMs.pdf (moved to https://github.com/janoleko/LaMa/blob/main/vignettes/pdfs/HSMMs.pdf)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://github.com/janoleko/LaMa/tree/main/vignettes/pdfs/Inhomogeneous_HMMs.pdf (moved to https://github.com/janoleko/LaMa/blob/main/vignettes/pdfs/Inhomogeneous_HMMs.pdf)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://github.com/janoleko/LaMa/tree/main/vignettes/pdfs/Intro_to_LaMa.pdf (moved to https://github.com/janoleko/LaMa/blob/main/vignettes/pdfs/Intro_to_LaMa.pdf)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://github.com/janoleko/LaMa/tree/main/vignettes/pdfs/Longitudinal_data.pdf (moved to https://github.com/janoleko/LaMa/blob/main/vignettes/pdfs/Longitudinal_data.pdf)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://github.com/janoleko/LaMa/tree/main/vignettes/pdfs/MMMPPs.pdf (moved to https://github.com/janoleko/LaMa/blob/main/vignettes/pdfs/MMMPPs.pdf)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://github.com/janoleko/LaMa/tree/main/vignettes/pdfs/Periodic_HMM.pdf (moved to https://github.com/janoleko/LaMa/blob/main/vignettes/pdfs/Periodic_HMM.pdf)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://github.com/janoleko/LaMa/tree/main/vignettes/pdfs/State_space_models.pdf (moved to https://github.com/janoleko/LaMa/blob/main/vignettes/pdfs/State_space_models.pdf)
    From: README.md
    Status: 301
    Message: Moved Permanently
  For content that is 'Moved Permanently', please change http to https,
  add trailing slashes, or replace the old by the new URL.

Size of tarball: 6034276 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LaMa’ can be installed ... [30s/30s] OK
* used C++ compiler: ‘Debian clang version 18.1.5 (2)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/6s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/1s] OK
  Running ‘testthat.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [33s/33s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE