lines <- c( "1,M,1.45,Rotterdam", "2,F,12.00,Amsterdam", "3,,.22 ,Berlin", ",M,22,Paris", "4,F,12345,London", "5,M,,Copenhagen", "6,M,-12.1,", "7,F,-1,Oslo") data <- data.frame( id=c(1,2,3,NA,4,5,6,7), gender=as.factor(c("M", "F", NA, "M", "F", "M", "M", "F")), x=c(1.45, 12, 0.22, 22, 12345, NA, -12.1, -1), city=c("Rotterdam", "Amsterdam", "Berlin", "Paris", "London", "Copenhagen", "", "Oslo"), stringsAsFactors=FALSE ) context("Reading of delimited files using blockwise operators") test_that("reading all data works (\\n end-of-line)", { fn <- tempfile() writeLines(lines, con=fn, sep="\n") laf <- laf_open_csv(filename=fn, column_types=c("integer", "categorical", "double", "string")) testdata <- laf[] expect_equal(testdata[,1], data[,1]) expect_equal(sort(levels(testdata[[2]])), c("F", "M")) expect_equal(as.character(testdata[,2]), as.character(data[,2])) expect_equal(testdata[,3], data[,3]) expect_equal(testdata[,4], data[,4]) expect_true(is.na(testdata[4,1])) expect_true(is.na(testdata[3,2])) expect_true(is.na(testdata[6,3])) file.remove(fn) }) test_that("reading all data works (\\r\\n end-of-line)", { fn <- tempfile() writeLines(lines, con=fn, sep="\r\n") laf <- laf_open_csv(filename=fn, column_types=c("integer", "categorical", "double", "string")) testdata <- laf[] expect_equal(testdata[,1], data[,1]) expect_equal(sort(levels(testdata[[2]])), c("F", "M")) expect_equal(as.character(testdata[,2]), as.character(data[,2])) expect_equal(testdata[,3], data[,3]) expect_equal(testdata[,4], data[,4]) expect_true(is.na(testdata[4,1])) expect_true(is.na(testdata[3,2])) expect_true(is.na(testdata[6,3])) file.remove(fn) }) test_that("reading all data works (\\n end-of-line; extra newline)", { fn <- tempfile() writeLines(c(lines,""), con=fn, sep="\n") laf <- laf_open_csv(filename=fn, column_types=c("integer", "categorical", "double", "string")) testdata <- laf[] expect_equal(testdata[,1], data[,1]) expect_equal(sort(levels(testdata[[2]])), c("F", "M")) expect_equal(as.character(testdata[,2]), as.character(data[,2])) expect_equal(testdata[,3], data[,3]) expect_equal(testdata[,4], data[,4]) expect_true(is.na(testdata[4,1])) expect_true(is.na(testdata[3,2])) expect_true(is.na(testdata[6,3])) file.remove(fn) }) test_that("reading all data works (\\n end-of-line; , decimal, ; seperator)", { fn <- tempfile() tmp <- gsub(",", ";", lines) writeLines(gsub("\\.", ",", tmp), con=fn, sep="\n") laf <- laf_open_csv(filename=fn, dec=",", sep=";", column_types=c("integer", "categorical", "double", "string")) testdata <- laf[] expect_equal(testdata[,1], data[,1]) expect_equal(sort(levels(testdata[[2]])), c("F", "M")) expect_equal(as.character(testdata[,2]), as.character(data[,2])) expect_equal(testdata[,3], data[,3]) expect_equal(testdata[,4], data[,4]) expect_true(is.na(testdata[4,1])) expect_true(is.na(testdata[3,2])) expect_true(is.na(testdata[6,3])) file.remove(fn) }) test_that("process_blocks works", { fn <- tempfile() writeLines(lines, con=fn, sep="\n") laf <- laf_open_csv(filename=fn, column_types=c("integer", "categorical", "double", "string")) calc_sum <- function(d, r) { if (is.null(r)) r <- 0 r <- r + sum(d[,1], na.rm=TRUE) } expect_equal(process_blocks(laf, calc_sum, columns=1), sum(data[,1], na.rm=TRUE)) expect_equal(process_blocks(laf, calc_sum, columns=3), sum(data[,3], na.rm=TRUE)) file.remove(fn) })