* installing *source* package ‘LOMAR’ ... ** this is package ‘LOMAR’ version ‘0.5.2’ ** using staged installation ** libs using C++ compiler: ‘Debian clang version 21.1.8 (1+b1)’ clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DBOOST_DISABLE_THREADS -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DBOOST_DISABLE_THREADS -fpic -g -O3 -Wall -pedantic -c diag.cpp -o diag.o In file included from diag.cpp:5: In file included from ./tdautils/ripsL2.h:9: In file included from ./topology/persistence-diagram.h:176: In file included from ./topology/persistence-diagram.hpp:143: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 411 | property_ptr m_property; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/graph_traits.hpp:62:22: note: in instantiation of template class 'boost::adjacency_list' requested here 62 | typedef typename G::vertex_descriptor vertex_descriptor; | ^ ./topology/persistence-diagram.hpp:163:40: note: in instantiation of template class 'boost::graph_traits>' requested here 163 | typedef std::vector::vertex_descriptor> MatchingVector; | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ In file included from diag.cpp:5: In file included from ./tdautils/ripsL2.h:9: In file included from ./topology/persistence-diagram.h:176: In file included from ./topology/persistence-diagram.hpp:143: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/archive/detail/basic_oarchive.hpp:49:44: note: in instantiation of template class 'boost::scoped_ptr' requested here 49 | boost::scoped_ptr pimpl; | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ In file included from diag.cpp:5: In file included from ./tdautils/ripsL2.h:9: In file included from ./topology/persistence-diagram.h:176: In file included from ./topology/persistence-diagram.hpp:143: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/archive/detail/basic_iarchive.hpp:51:44: note: in instantiation of template class 'boost::scoped_ptr' requested here 51 | boost::scoped_ptr pimpl; | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 3 warnings generated. clang++-21 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-clang-21/lib -Wl,-O1 -o LOMAR.so RcppExports.o diag.o -lgmp -L/home/hornik/tmp/R-d-clang-21/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/LOMAR.Rcheck/00LOCK-LOMAR/00new/LOMAR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LOMAR)