R Under development (unstable) (2025-05-03 r88188 ucrt) -- "Unsuffered Consequences"
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Platform: x86_64-w64-mingw32/x64

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> library(testthat)
> library(LMMELSM)
> 
> test_check("LMMELSM")

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.005104 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 51.04 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 2 [ 50%]  (Warmup)
Chain 1: Iteration: 2 / 2 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.024 seconds (Warm-up)
Chain 1:                0.012 seconds (Sampling)
Chain 1:                0.036 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.012038 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 120.38 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 2 [ 50%]  (Warmup)
Chain 1: Iteration: 2 / 2 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.393 seconds (Warm-up)
Chain 1:                0.017 seconds (Sampling)
Chain 1:                0.41 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.012554 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 125.54 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 2 [ 50%]  (Warmup)
Chain 1: Iteration: 2 / 2 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.046 seconds (Warm-up)
Chain 1:                0.024 seconds (Sampling)
Chain 1:                0.07 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.005006 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 50.06 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 1.763 seconds (Warm-up)
Chain 1:                10.512 seconds (Sampling)
Chain 1:                12.275 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 0.004815 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 48.15 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2: 
Chain 2: 
Chain 2: WARNING: No variance estimation is
Chain 2:          performed for num_warmup < 20
Chain 2: 
Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
Chain 2: 
Chain 2:  Elapsed Time: 0.185 seconds (Warm-up)
Chain 2:                0.046 seconds (Sampling)
Chain 2:                0.231 seconds (Total)
Chain 2: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000997 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 9.97 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.797 seconds (Warm-up)
Chain 1:                0.019 seconds (Sampling)
Chain 1:                0.816 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000842 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 8.42 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.006 seconds (Warm-up)
Chain 1:                0.007 seconds (Sampling)
Chain 1:                0.013 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.00089 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 8.9 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.006 seconds (Warm-up)
Chain 1:                0.007 seconds (Sampling)
Chain 1:                0.013 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.0021 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 21 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.041 seconds (Warm-up)
Chain 1:                0.016 seconds (Sampling)
Chain 1:                0.057 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.00226 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 22.6 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.012 seconds (Warm-up)
Chain 1:                0.011 seconds (Sampling)
Chain 1:                0.023 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.001182 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 11.82 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.02 seconds (Warm-up)
Chain 1:                0.007 seconds (Sampling)
Chain 1:                0.027 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000993 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 9.93 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.007 seconds (Warm-up)
Chain 1:                0.009 seconds (Sampling)
Chain 1:                0.016 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.002933 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 29.33 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.079 seconds (Warm-up)
Chain 1:                0.022 seconds (Sampling)
Chain 1:                0.101 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.001131 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 11.31 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.037 seconds (Warm-up)
Chain 1:                0.006 seconds (Sampling)
Chain 1:                0.043 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.005793 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 57.93 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.064 seconds (Warm-up)
Chain 1:                0.042 seconds (Sampling)
Chain 1:                0.106 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.006055 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 60.55 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.062 seconds (Warm-up)
Chain 1:                0.036 seconds (Sampling)
Chain 1:                0.098 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.005767 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 57.67 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.049 seconds (Warm-up)
Chain 1:                0.028 seconds (Sampling)
Chain 1:                0.077 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.015641 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 156.41 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.094 seconds (Warm-up)
Chain 1:                0.089 seconds (Sampling)
Chain 1:                0.183 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.022189 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 221.89 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.115 seconds (Warm-up)
Chain 1:                0.112 seconds (Sampling)
Chain 1:                0.227 seconds (Total)
Chain 1: 
 [1] "N"                    "J"                    "F"                   
 [4] "K"                    "P"                    "Q"                   
 [7] "n"                    "R"                    "P_random"            
[10] "Q_random"             "P_random_ind"         "Q_random_ind"        
[13] "lambda"               "resid"                "nu"                  
[16] "mu_beta"              "logsd_beta"           "zeta"                
[19] "mu_logsd_betas_cor"   "mu_logsd_betas_sigma" "epsilon_cor"         
[22] "eta"                  "eta_logsd"            "mu_logsd_betas_re"   
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 666 ]
> 
> proc.time()
   user  system elapsed 
 141.03    1.57  142.62