R Under development (unstable) (2025-05-03 r88188 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(LMMELSM)
> 
> test_check("LMMELSM")

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.006961 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 69.61 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 2 [ 50%]  (Warmup)
Chain 1: Iteration: 2 / 2 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.024 seconds (Warm-up)
Chain 1:                0.012 seconds (Sampling)
Chain 1:                0.036 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.008847 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 88.47 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 2 [ 50%]  (Warmup)
Chain 1: Iteration: 2 / 2 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.032 seconds (Warm-up)
Chain 1:                0.016 seconds (Sampling)
Chain 1:                0.048 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.016702 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 167.02 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 2 [ 50%]  (Warmup)
Chain 1: Iteration: 2 / 2 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.9 seconds (Warm-up)
Chain 1:                0.033 seconds (Sampling)
Chain 1:                0.933 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.005998 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 59.98 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.256 seconds (Warm-up)
Chain 1:                0.063 seconds (Sampling)
Chain 1:                0.319 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 0.006096 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 60.96 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2: 
Chain 2: 
Chain 2: WARNING: No variance estimation is
Chain 2:          performed for num_warmup < 20
Chain 2: 
Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
Chain 2: 
Chain 2:  Elapsed Time: 0.471 seconds (Warm-up)
Chain 2:                0.188 seconds (Sampling)
Chain 2:                0.659 seconds (Total)
Chain 2: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.001477 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 14.77 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.816 seconds (Warm-up)
Chain 1:                0.021 seconds (Sampling)
Chain 1:                0.837 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.001179 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 11.79 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.009 seconds (Warm-up)
Chain 1:                0.01 seconds (Sampling)
Chain 1:                0.019 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.00119 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 11.9 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.009 seconds (Warm-up)
Chain 1:                0.011 seconds (Sampling)
Chain 1:                0.02 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.002953 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 29.53 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.059 seconds (Warm-up)
Chain 1:                0.023 seconds (Sampling)
Chain 1:                0.082 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.002099 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 20.99 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.013 seconds (Warm-up)
Chain 1:                0.012 seconds (Sampling)
Chain 1:                0.025 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.001005 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 10.05 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.02 seconds (Warm-up)
Chain 1:                0.007 seconds (Sampling)
Chain 1:                0.027 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000841 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 8.41 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.006 seconds (Warm-up)
Chain 1:                0.008 seconds (Sampling)
Chain 1:                0.014 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.002586 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 25.86 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.081 seconds (Warm-up)
Chain 1:                0.02 seconds (Sampling)
Chain 1:                0.101 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.001155 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 11.55 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.039 seconds (Warm-up)
Chain 1:                0.007 seconds (Sampling)
Chain 1:                0.046 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.005665 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 56.65 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.062 seconds (Warm-up)
Chain 1:                0.041 seconds (Sampling)
Chain 1:                0.103 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.00616 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 61.6 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.06 seconds (Warm-up)
Chain 1:                0.036 seconds (Sampling)
Chain 1:                0.096 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPredObs2' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.005586 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 55.86 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.051 seconds (Warm-up)
Chain 1:                0.031 seconds (Sampling)
Chain 1:                0.082 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.017067 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 170.67 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.102 seconds (Warm-up)
Chain 1:                0.104 seconds (Sampling)
Chain 1:                0.206 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.014569 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 145.69 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 5 [ 20%]  (Warmup)
Chain 1: Iteration: 2 / 5 [ 40%]  (Warmup)
Chain 1: Iteration: 3 / 5 [ 60%]  (Sampling)
Chain 1: Iteration: 4 / 5 [ 80%]  (Sampling)
Chain 1: Iteration: 5 / 5 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.102 seconds (Warm-up)
Chain 1:                0.104 seconds (Sampling)
Chain 1:                0.206 seconds (Total)
Chain 1: 
 [1] "N"                    "J"                    "F"                   
 [4] "K"                    "P"                    "Q"                   
 [7] "n"                    "R"                    "P_random"            
[10] "Q_random"             "P_random_ind"         "Q_random_ind"        
[13] "lambda"               "resid"                "nu"                  
[16] "mu_beta"              "logsd_beta"           "zeta"                
[19] "mu_logsd_betas_cor"   "mu_logsd_betas_sigma" "epsilon_cor"         
[22] "eta"                  "eta_logsd"            "mu_logsd_betas_re"   
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 666 ]
> 
> proc.time()
   user  system elapsed 
 133.40    1.95  135.35