* using log directory ‘/srv/hornik/tmp/CRAN_pretest/LLMR.Rcheck’ * using R Under development (unstable) (2025-05-26 r88238) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3) Debian flang-new version 19.1.7 (3) * running under: Debian GNU/Linux 13 (trixie) * using session charset: UTF-8 * checking for file ‘LLMR/DESCRIPTION’ ... OK * this is package ‘LLMR’ version ‘0.3.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/7s] NOTE Maintainer: ‘Ali Sanaei ’ Possibly misspelled words in DESCRIPTION: embeddings (7:140) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘LLMR’ can be installed ... [2s/2s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [1s/1s] OK Running ‘testthat.R’ [0s/0s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [15s/18s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘parallel_calls.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN_pretest/LLMR.Rcheck/vign_test/LLMR/vignettes/parallel_calls_files/figure-html/unnamed-chunk-8-1.png 768x288 pixels, 8 bits/pixel, 245 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5094 bytes Input file size = 5919 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4135 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4135 Output IDAT size = 4135 bytes (959 bytes decrease) Output file size = 4213 bytes (1706 bytes = 28.82% decrease) --- finished re-building ‘parallel_calls.Rmd’ --- re-building ‘presidential_embeddings.Rmd’ using rmarkdown Quitting from presidential_embeddings.Rmd:48-54 [embeddings] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `rownames<-`: ! attempt to set 'rownames' on an object with no dimensions --- Backtrace: ▆ 1. └─LLMR::get_batched_embeddings(...) 2. ├─base::`row.names<-`(`*tmp*`, value = names(texts)) 3. └─base::`row.names<-.default`(`*tmp*`, value = names(texts)) 4. └─base::`rownames<-`(x, value) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'presidential_embeddings.Rmd' failed with diagnostics: attempt to set 'rownames' on an object with no dimensions --- failed re-building ‘presidential_embeddings.Rmd’ SUMMARY: processing the following file failed: ‘presidential_embeddings.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE