* using log directory ‘/srv/hornik/tmp/CRAN/Kifidi.Rcheck’ * using R Under development (unstable) (2024-08-17 r87027) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘Kifidi/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Kifidi’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Oswald Omuron ’ New submission Possibly misspelled words in DESCRIPTION: Kifidi (12:13) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘Kifidi’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) summarize_data.Rd:29: Lost braces 29 | \describe{Group1, Group2.}{ The grouping variables.} | ^ checkRd: (-1) summarize_data.Rd:30: Lost braces 30 | \describe{Mean.}{ The mean of the data for each group.} | ^ checkRd: (-1) summarize_data.Rd:31: Lost braces 31 | \describe{SD.}{ The standard deviation of the data for each group.} | ^ checkRd: (-1) summarize_data.Rd:32: Lost braces 32 | \describe{N.}{ The sample size for each group.} | ^ checkRd: (-1) summarize_data.Rd:33: Lost braces 33 | \describe{Min.}{ The minimum value of the data for each group.} | ^ checkRd: (-1) summarize_data.Rd:34: Lost braces 34 | \describe{Max.}{ The maximum value of the data for each group.} | ^ checkRd: (-1) summarize_data.Rd:35: Lost braces 35 | \describe{Median.}{ The median value of the data for each group.} | ^ checkRd: (-1) summarize_data.Rd:36: Lost braces 36 | \describe{SE.}{ The standard error of the mean for each group.} | ^ * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'plot_means.Rd': \examples lines wider than 100 characters: 194.8, 169.9, 159.1, 100.8, 130.8, 93.6, 105.7, 178.4, 203, 172.2, 127.3, 128.3, 110.9, 124.1, 179.1, summary_two_groups <- summarize_data(example_df$EC_uS_cm, example_df$Vegetation_types, example_df$Depth_revised) plot_means(summary_two_groups, ylim=c(0,350), las=2, space = c(0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0)) Rd file 'summarize_data.Rd': \examples lines wider than 100 characters: 194.8, 169.9, 159.1, 100.8, 130.8, 93.6, 105.7, 178.4, 203, 172.2, 127.3, 128.3, 110.9, 124.1, 179.1, summary_two_groups <- summarize_data(example_df$EC_uS_cm, example_df$Vegetation_types, example_df$Depth_revised) These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [0s/0s] OK * checking PDF version of manual ... [4s/3s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Something's wrong--perhaps a missing \item. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... ! LaTeX Error: Something's wrong--perhaps a missing \item. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... ! LaTeX Error: Something's wrong--perhaps a missing \item. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... ! LaTeX Error: Something's wrong--perhaps a missing \item. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... ! LaTeX Error: Something's wrong--perhaps a missing \item. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... ! LaTeX Error: Something's wrong--perhaps a missing \item. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... ! LaTeX Error: Something's wrong--perhaps a missing \item. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... ! LaTeX Error: Something's wrong--perhaps a missing \item. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... NOTE Found the following files/directories: ‘Kifidi-manual.tex’ * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING, 4 NOTEs