downloading reverse dependencies ... downloading MetChem_0.4.tar.gz ... ok installing dependencies ‘fingerprint’, ‘KODAMA’, ‘rcdk’ also installing the dependency ‘rcdklibs’ begin installing package ‘KODAMA’ begin installing package ‘rcdklibs’ begin installing package ‘fingerprint’ * installing *source* package ‘rcdklibs’ ... ** this is package ‘rcdklibs’ version ‘2.9’ ** package ‘rcdklibs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcdklibs) * installing *source* package ‘fingerprint’ ... ** this is package ‘fingerprint’ version ‘3.5.7’ ** package ‘fingerprint’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAUB8Td/R.INSTALL9e75664241b6d/fingerprint/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fpdistance.c -o fpdistance.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c readfps.c -o readfps.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o fingerprint.so fpdistance.o readfps.o registerDynamicSymbol.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAUB8Td/R.INSTALL9e75664241b6d/fingerprint/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fingerprint/00new/fingerprint/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘xor’ from package ‘base’ in package ‘fingerprint’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fingerprint) begin installing package ‘rcdk’ * installing *source* package ‘rcdk’ ... ** this is package ‘rcdk’ version ‘3.8.1’ ** package ‘rcdk’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcdk) * installing *source* package ‘KODAMA’ ... ** this is package ‘KODAMA’ version ‘3.0’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2Z0eo3/R.INSTALL9e7545eb47018/KODAMA/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rnanoflann/include' -I'/home/hornik/tmp/R-d-gcc-14/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rnanoflann/include' -I'/home/hornik/tmp/R-d-gcc-14/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c irlba.c -o irlba.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rnanoflann/include' -I'/home/hornik/tmp/R-d-gcc-14/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c prova.cpp -o prova.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o KODAMA.so RcppExports.o irlba.o prova.o -L. -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2Z0eo3/R.INSTALL9e7545eb47018/KODAMA/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-KODAMA/00new/KODAMA/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KODAMA) checking KODAMA_3.0.tar.gz ... checking MetChem_0.4.tar.gz ... Depends: Package: KODAMA Depends: R (>= 2.10.0), stats, Rtsne, umap Imports: Rcpp (>= 0.12.4), Rnanoflann, methods, Matrix LinkingTo: Rcpp, RcppArmadillo, Rnanoflann, Matrix Timings: user system elapsed KODAMA 60.704 6.37 69.325 Results: Check status summary: NOTE Source packages 1 Reverse depends 1 Check results summary: KODAMA ... NOTE * checking CRAN incoming feasibility ... [5s/7s] NOTE rdepends_MetChem ... NOTE * checking Rd cross-references ... NOTE