* using log directory ‘/srv/hornik/tmp/CRAN/KINSIMU.Rcheck’ * using R Under development (unstable) (2023-11-25 r85635) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.5 (1) Debian flang-new version 17.0.5 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘KINSIMU/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘KINSIMU’ version ‘0.1.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Guanju Ma ’ New submission Unknown, possibly misspelled, fields in DESCRIPTION: ‘Author@R’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘KINSIMU’ can be installed ... [2s/2s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'LRparas.Rd': \examples lines wider than 100 characters: LRelements<-LRparas(AB=AB, af=af, rare=FortytwoSTR$rare[1],allelename=FALSE,stepwisePI=TRUE,bred=TRUE) These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [0s/1s] ERROR Running examples in ‘KINSIMU-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: EvaluatePanel > ### Title: Evaluate a panel > ### Aliases: EvaluatePanel > > ### ** Examples > > #A .csv file has been uploaded to the github repository Guanju-Ma/data111 for the examples > #Example 1, 'df' type, by read the csv file into a data frame > allele_data <- read.csv(file = "https://raw.githubusercontent.com/Guanju-Ma/data111/main/42STR.csv", + header = T) Error in read.table(file = file, header = header, sep = sep, quote = quote, : T used instead of TRUE Calls: read.csv -> read.table Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 NOTEs