* using log directory ‘/srv/hornik/tmp/CRAN_pretest/JMbdirect.Rcheck’
* using R Under development (unstable) (2024-10-31 r87283)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘JMbdirect/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘JMbdirect’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Atanu Bhattacharjee <atanustat@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  survioval (3:38)

The Title field should be in title case. Current version is:
  ‘Joint model for Bidirectional survioval data’
In title case that is:
  ‘Joint Model for Bidirectional Survioval Data’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘JMbdirect’ can be installed ... [19s/19s] WARNING
Found the following significant warnings:
  Note: possible error in 'predJRML(model = x$model1, ': unused argument (u = seq(t_0, t_1, length.out = 20)) 
  Note: possible error in 'predJRML(model = x$model2, ': unused argument (u = seq(t_1, 2 * t_1, length.out = 20)) 
  Note: possible error in 'predJRML(model = x$model2, ': unused argument (u = seq(t_1, t_0, length.out = 20)) 
  Note: possible error in 'predJRML(model = x$model1, ': unused argument (u = seq(t_0, 2 * t_0, length.out = 20)) 
  Note: possible error in 'predJRML(model = object$model1, ': unused argument (u = seq(t_0, t_1, length.out = 20)) 
  Note: possible error in 'predJRML(model = object$model2, ': unused argument (u = seq(t_1, 2 * t_1, length.out = 20)) 
  Note: possible error in 'predJRML(model = object$model2, ': unused argument (u = seq(t_1, t_0, length.out = 20)) 
  Note: possible error in 'predJRML(model = object$model1, ': unused argument (u = seq(t_0, 2 * t_0, length.out = 20)) 
See ‘/srv/hornik/tmp/CRAN_pretest/JMbdirect.Rcheck/00install.out’ for details.
Information on the location(s) of code generating the ‘Note’s can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to ‘yes’.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the package can be unloaded cleanly ... [4s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
* checking loading without being on the library search path ... [6s/6s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
print:
  function(object, ...)
print.jmbB:
  function(x, ...)

print:
  function(object, ...)
print.jmrmlB:
  function(x, ...)

print:
  function(object, ...)
print.jmstB:
  function(x, ...)

print:
  function(object, ...)
print.jmcsB:
  function(x, ...)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [22s/20s] NOTE
plot.jmrmlB: possible error in predJRML(model = x$model1, ids = ID,
  dtlong = longdata1, dtsurv = survdata1, u = seq(t_0, t_1, length.out
  = 20)): unused argument (u = seq(t_0, t_1, length.out = 20))
plot.jmrmlB: possible error in predJRML(model = x$model2, ids = ID,
  dtlong = longdata2, dtsurv = survdata2, u = seq(t_1, 2 * t_1,
  length.out = 20)): unused argument (u = seq(t_1, 2 * t_1, length.out
  = 20))
plot.jmrmlB: possible error in predJRML(model = x$model2, ids = ID,
  dtlong = longdata2, dtsurv = survdata2, u = seq(t_1, t_0, length.out
  = 20)): unused argument (u = seq(t_1, t_0, length.out = 20))
plot.jmrmlB: possible error in predJRML(model = x$model1, ids = ID,
  dtlong = longdata1, dtsurv = survdata1, u = seq(t_0, 2 * t_0,
  length.out = 20)): unused argument (u = seq(t_0, 2 * t_0, length.out
  = 20))
predict.jmrmlB: possible error in predJRML(model = object$model1, ids =
  ID, dtlong = longdata1, dtsurv = survdata1, u = seq(t_0, t_1,
  length.out = 20)): unused argument (u = seq(t_0, t_1, length.out =
  20))
predict.jmrmlB: possible error in predJRML(model = object$model2, ids =
  ID, dtlong = longdata2, dtsurv = survdata2, u = seq(t_1, 2 * t_1,
  length.out = 20)): unused argument (u = seq(t_1, 2 * t_1, length.out
  = 20))
predict.jmrmlB: possible error in predJRML(model = object$model2, ids =
  ID, dtlong = longdata2, dtsurv = survdata2, u = seq(t_1, t_0,
  length.out = 20)): unused argument (u = seq(t_1, t_0, length.out =
  20))
predict.jmrmlB: possible error in predJRML(model = object$model1, ids =
  ID, dtlong = longdata1, dtsurv = survdata1, u = seq(t_0, 2 * t_0,
  length.out = 20)): unused argument (u = seq(t_0, 2 * t_0, length.out
  = 20))
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [8s/8s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs