transition_example_a <- function() { f <- function(x, y, a) a environment(f) <- emptyenv() transition( from = "a", to = "b", transition_type = "probability", mortality_type = NULL, fun = new_transition_function(f), predictors = list( x = predictor_spec("temp"), y = predictor_spec("host_density") ), parameters = parameters(a = 1) ) } transition_example_b <- function() { b <- transition_example_a() b$from <- "b" b$to <- "a" b } life_cycle_example_a <- function() { life_cycle( transition_example_a(), transition_example_b() ) } predictors_example_a <- function() { predictors(data.frame( pred = "temp", pred_subcategory = NA, j_day = NA, value = 1 )) } predictors_example_b <- function() { predictors(data.frame( pred = c("host_density", "temp"), pred_subcategory = NA, j_day = NA, value = 1 )) } # TODO there are also (old) example configs loaded with the package - need to # think about what to put in data/ vs tests/helper.R config_example_a <- function() { config( cycle = life_cycle_example_a(), preds = predictors_example_b(), initial_population = c(a = 1L, b = 0L), steps = 10L, max_duration = 365L, verbose = FALSE ) }