* using log directory 'd:/RCompile/CRANincoming/R-devel/IntNMF.Rcheck' * using R Under development (unstable) (2025-01-07 r87537 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'IntNMF/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'IntNMF' version '1.3.0' * checking CRAN incoming feasibility ... NOTE Maintainer: 'Prabhakar Chalise ' No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Prabhakar", family = "Chalise", role = c("aut", "cre"), email = "pchalise@kumc.edu"), person(given = "Rama", family = "Raghavan", role = "aut"), person(given = "Brooke", family = "Fridley", role = "aut")) as necessary. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .Rproj.user These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. CRAN-pack knows about all of these * checking for portable file names ... OK * checking whether package 'IntNMF' can be installed ... WARNING Found the following significant warnings: Warning: ClusterEntropy.Rd:59: All text must be in a section Warning: ClusterEntropy.Rd:60: All text must be in a section Warning: ClusterEntropy.Rd:61: All text must be in a section Warning: ClusterEntropy.Rd:62: All text must be in a section Warning: ClusterPurity.Rd:59: All text must be in a section Warning: ClusterPurity.Rd:60: All text must be in a section Warning: ClusterPurity.Rd:61: All text must be in a section Warning: ClusterPurity.Rd:62: All text must be in a section Warning: ConsensusMatPlot.Rd:64: All text must be in a section Warning: ConsensusMatPlot.Rd:65: All text must be in a section Warning: ConsensusMatPlot.Rd:66: All text must be in a section Warning: ConsensusMatPlot.Rd:67: All text must be in a section Warning: SilhouettePlot.Rd:60: All text must be in a section Warning: SilhouettePlot.Rd:61: All text must be in a section Warning: SilhouettePlot.Rd:62: All text must be in a section Warning: SilhouettePlot.Rd:63: All text must be in a section Warning: nmf.mnnals.Rd:104: All text must be in a section Warning: nmf.mnnals.Rd:105: All text must be in a section Warning: nmf.mnnals.Rd:106: All text must be in a section Warning: nmf.mnnals.Rd:107: All text must be in a section Warning: nmf.opt.k.Rd:93: All text must be in a section Warning: nmf.opt.k.Rd:94: All text must be in a section Warning: nmf.opt.k.Rd:95: All text must be in a section Warning: nmf.opt.k.Rd:96: All text must be in a section See 'd:/RCompile/CRANincoming/R-devel/IntNMF.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING prepare_Rd: ClusterEntropy.Rd:59: All text must be in a section prepare_Rd: ClusterEntropy.Rd:60: All text must be in a section prepare_Rd: ClusterEntropy.Rd:61: All text must be in a section prepare_Rd: ClusterEntropy.Rd:62: All text must be in a section prepare_Rd: ClusterPurity.Rd:59: All text must be in a section prepare_Rd: ClusterPurity.Rd:60: All text must be in a section prepare_Rd: ClusterPurity.Rd:61: All text must be in a section prepare_Rd: ClusterPurity.Rd:62: All text must be in a section prepare_Rd: ConsensusMatPlot.Rd:64: All text must be in a section prepare_Rd: ConsensusMatPlot.Rd:65: All text must be in a section prepare_Rd: ConsensusMatPlot.Rd:66: All text must be in a section prepare_Rd: ConsensusMatPlot.Rd:67: All text must be in a section prepare_Rd: SilhouettePlot.Rd:60: All text must be in a section prepare_Rd: SilhouettePlot.Rd:61: All text must be in a section prepare_Rd: SilhouettePlot.Rd:62: All text must be in a section prepare_Rd: SilhouettePlot.Rd:63: All text must be in a section prepare_Rd: nmf.mnnals.Rd:104: All text must be in a section prepare_Rd: nmf.mnnals.Rd:105: All text must be in a section prepare_Rd: nmf.mnnals.Rd:106: All text must be in a section prepare_Rd: nmf.mnnals.Rd:107: All text must be in a section prepare_Rd: nmf.opt.k.Rd:93: All text must be in a section prepare_Rd: nmf.opt.k.Rd:94: All text must be in a section prepare_Rd: nmf.opt.k.Rd:95: All text must be in a section prepare_Rd: nmf.opt.k.Rd:96: All text must be in a section * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [19s] OK * checking PDF version of manual ... [17s] OK * checking HTML version of manual ... OK * DONE Status: 2 WARNINGs, 2 NOTEs