installing dependencies ‘gmp’, ‘multcomp’, ‘Rcpp’ also installing the dependencies ‘zoo’, ‘mvtnorm’, ‘TH.data’, ‘sandwich’ begin installing package ‘zoo’ begin installing package ‘TH.data’ begin installing package ‘mvtnorm’ begin installing package ‘Rcpp’ begin installing package ‘gmp’ * installing *source* package ‘TH.data’ ... ** this is package ‘TH.data’ version ‘1.1-5’ ** package ‘TH.data’ successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** demo ** inst ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TH.data) * installing *source* package ‘zoo’ ... ** this is package ‘zoo’ version ‘1.8-14’ ** package ‘zoo’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpp6lPvR/R.INSTALLa80b43e693504/zoo/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coredata.c -o coredata.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lag.c -o lag.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-valg/lib -Wl,-O1 -o zoo.so coredata.o init.o lag.o -L/home/hornik/tmp/R-d-gcc-valg/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp6lPvR/R.INSTALLa80b43e693504/zoo/src' installing to /home/hornik/tmp/CRAN_special_valgrind/Library/00LOCK-zoo/00new/zoo/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zoo) begin installing package ‘sandwich’ * installing *source* package ‘mvtnorm’ ... ** this is package ‘mvtnorm’ version ‘1.3-3’ ** package ‘mvtnorm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfSyB0C/R.INSTALLa80b9488ba570/mvtnorm/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_FORTRAN_interface.c -o C_FORTRAN_interface.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lpmvnorm.c -o lpmvnorm.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ltMatrices.c -o ltMatrices.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c miwa.c -o miwa.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c mvt.f -o mvt.o mvt.f:868:11: 868 | hs = sign( one, dh - r*dk ) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] mvt.f:869:11: 869 | ks = sign( one, dk - r*dh ) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] mvt.f:1164:16: 1164 | K = MOD( C(NP, MIN(NDIM-1,KLIM-1))*DBLE(K), DBLE(P(NP)) ) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] mvt.f:1224:17: 1224 | JP = 1 + J*R(J) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] gcc-15 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvtnorm-init.c -o mvtnorm-init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c tvpack.f -o tvpack.o tvpack.f:395:14: 395 | HS = SIGN( ONE, DH - R*DK ) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] tvpack.f:396:14: 396 | KS = SIGN( ONE, DK - R*DH ) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] tvpack.f:220:72: 220 | END | ^ Warning: ‘fin’ may be used uninitialized [-Wmaybe-uninitialized] tvpack.f:196:56: 196 | DOUBLE PRECISION EI(NL), AI(NL), BI(NL), FI(NL), FIN, ERR, KRNRDT | ^~~ note: ‘fin’ was declared here gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-valg/lib -Wl,-O1 -o mvtnorm.so C_FORTRAN_interface.o lpmvnorm.o ltMatrices.o miwa.o mvt.o mvtnorm-init.o tvpack.o -llapack -L/home/hornik/tmp/R-d-gcc-valg/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-valg/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfSyB0C/R.INSTALLa80b9488ba570/mvtnorm/src' installing to /home/hornik/tmp/CRAN_special_valgrind/Library/00LOCK-mvtnorm/00new/mvtnorm/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvtnorm) * installing *source* package ‘sandwich’ ... ** this is package ‘sandwich’ version ‘3.1-1’ ** package ‘sandwich’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sandwich) begin installing package ‘multcomp’ * installing *source* package ‘multcomp’ ... ** this is package ‘multcomp’ version ‘1.4-29’ ** package ‘multcomp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multcomp) * installing *source* package ‘gmp’ ... ** this is package ‘gmp’ version ‘0.7-5’ ** package ‘gmp’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-15 -E checking whether we are using the GNU C++ compiler... yes checking whether g++-15 -std=gnu++17 accepts -g... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking gmp.h usability... yes checking gmp.h presence... yes checking for gmp.h... yes checking for __gmpz_ui_sub in -lgmp... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZ9RryO/R.INSTALLa80b86b91af73/gmp/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c apply.cc -o apply.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c biginteger.cc -o biginteger.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bigintegerR.cc -o bigintegerR.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bigmod.cc -o bigmod.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bigrational.cc -o bigrational.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bigrationalR.cc -o bigrationalR.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bigvec.cc -o bigvec.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bigvec_q.cc -o bigvec_q.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c extract_matrix.cc -o extract_matrix.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c factor.cc -o factor.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c factorize.cc -o factorize.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cc -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix.cc -o matrix.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrixq.cc -o matrixq.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c solve.cc -o solve.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-valg/lib -Wl,-O1 -o gmp.so apply.o biginteger.o bigintegerR.o bigmod.o bigrational.o bigrationalR.o bigvec.o bigvec_q.o extract_matrix.o factor.o factorize.o init.o matrix.o matrixq.o solve.o -lgmp -L/home/hornik/tmp/R-d-gcc-valg/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZ9RryO/R.INSTALLa80b86b91af73/gmp/src' installing to /home/hornik/tmp/CRAN_special_valgrind/Library/00LOCK-gmp/00new/gmp/libs ** R ** data ** byte-compile and prepare package for lazy loading Creating a generic function for ‘which.max’ from package ‘base’ in package ‘gmp’ Creating a generic function for ‘which.min’ from package ‘base’ in package ‘gmp’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gmp) * installing *source* package ‘Rcpp’ ... ** this is package ‘Rcpp’ version ‘1.1.0.8.1’ ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp06aQnL/R.INSTALLa80bb553d773c/Rcpp/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c api.cpp -o api.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c attributes.cpp -o attributes.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c barrier.cpp -o barrier.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c date.cpp -o date.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c module.cpp -o module.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-valg/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_init.cpp -o rcpp_init.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-valg/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R-d-gcc-valg/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp06aQnL/R.INSTALLa80bb553d773c/Rcpp/src' installing to /home/hornik/tmp/CRAN_special_valgrind/Library/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) checking ICRanks_3.3.tar.gz ... Depends: Package: ICRanks Imports: Rcpp (>= 0.12.11), multcomp, gmp LinkingTo: Rcpp Timings: user system elapsed ICRanks 152.225 5.295 159.211 Results: Check status summary: OK Source packages 1 Check results summary: ICRanks ... OK