* using log directory ‘/srv/hornik/tmp/CRAN/Hmisc.Rcheck’ * using R Under development (unstable) (2023-09-10 r85120) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (11) GNU Fortran (Debian 13.2.0-2) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘Hmisc/DESCRIPTION’ ... OK * this is package ‘Hmisc’ version ‘5.1-1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [6s/8s] NOTE Maintainer: ‘Frank E Harrell Jr ’ Possibly misspelled words in DESCRIPTION: decrypting (30:77) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘Hmisc’ can be installed ... [22s/22s] OK * used C compiler: ‘Debian clang version 16.0.6 (13)’ * used Fortran compiler: ‘GNU Fortran (Debian 13.2.0-2) 13.2.0’ * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [53s/53s] NOTE html_describe_con: multiple local function definitions for ‘g’ with different formal arguments * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... NOTE Argument items with no description in Rd object ‘bpower’: ‘odds.ratio’ ‘percent.reduction’ ‘n1’ Argument items with no description in Rd object ‘describe’: ‘data’ ‘subset’ Argument items with no description in Rd object ‘find.matches’: ‘xcase’ ‘ycase’ ‘idcase’ Argument items with no description in Rd object ‘labcurve’: ‘x’ ‘width’ ‘col.’ ‘empty.method’ ‘xlab’ Argument items with no description in Rd object ‘varclus’: ‘data’ ‘subset’ ‘lty’ ‘col’ * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [45s/45s] OK * checking PDF version of manual ... [11s/11s] OK * checking HTML version of manual ... [9s/9s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 NOTEs