downloading reverse dependencies ... downloading alien_1.0.2.tar.gz ... ok downloading BoneProfileR_3.1.tar.gz ... ok downloading CSeQTL_1.0.0.tar.gz ... ok downloading embryogrowth_9.5.tar.gz ... ok downloading phenology_10.1.tar.gz ... ok installing dependencies ‘emdbook’, ‘HelpersMG’, ‘ijtiff’, ‘MatrixEQTL’, ‘MultiRNG’, ‘nlWaldTest’, ‘smarter’ begin installing package ‘HelpersMG’ begin installing package ‘ijtiff’ begin installing package ‘smarter’ begin installing package ‘emdbook’ begin installing package ‘MatrixEQTL’ begin installing package ‘MultiRNG’ begin installing package ‘nlWaldTest’ * installing *source* package ‘nlWaldTest’ ... ** this is package ‘nlWaldTest’ version ‘1.1.3’ ** package ‘nlWaldTest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlWaldTest) * installing *source* package ‘MultiRNG’ ... ** this is package ‘MultiRNG’ version ‘1.2.4’ ** package ‘MultiRNG’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiRNG) * installing *source* package ‘MatrixEQTL’ ... ** this is package ‘MatrixEQTL’ version ‘2.3’ ** package ‘MatrixEQTL’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixEQTL) * installing *source* package ‘ijtiff’ ... ** this is package ‘ijtiff’ version ‘3.1.3’ ** package ‘ijtiff’ successfully unpacked and MD5 sums checked ** using staged installation ** preparing to configure package 'ijtiff' ... Found pkg-config! Found pkg-config cflags and/or libs for libtiff! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu -I/usr/include/webp Using PKG_LIBS=-ltiff -lwebp -lm -lsharpyuv -lzstd -pthread -llzma -lpthread -ljpeg -ldeflate -lz ** finished configure for package 'ijtiff' ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpb3Ge3d/R.INSTALL2866eb4756847e/ijtiff/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common.c -o common.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read.c -o read.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tags.c -o tags.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c write.c -o write.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ijtiff.so common.o init.o read.o tags.o utils.o write.o -ltiff -lwebp -lm -lsharpyuv -lzstd -pthread -llzma -lpthread -ljpeg -ldeflate -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpb3Ge3d/R.INSTALL2866eb4756847e/ijtiff/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ijtiff/00new/ijtiff/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ijtiff) * installing *source* package ‘emdbook’ ... ** this is package ‘emdbook’ version ‘1.3.13’ ** package ‘emdbook’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emdbook) * installing *source* package ‘HelpersMG’ ... ** this is package ‘HelpersMG’ version ‘6.5’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HelpersMG) * installing *source* package ‘smarter’ ... ** this is package ‘smarter’ version ‘1.0.1’ ** package ‘smarter’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6Xrhue/R.INSTALL2866ee50edfd1d/smarter/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c smarter.cpp -o smarter.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o smarter.so RcppExports.o smarter.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6Xrhue/R.INSTALL2866ee50edfd1d/smarter/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-smarter/00new/smarter/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smarter) checking HelpersMG_6.5.tar.gz ... checking alien_1.0.2.tar.gz ... checking BoneProfileR_3.1.tar.gz ... checking CSeQTL_1.0.0.tar.gz ... checking embryogrowth_9.5.tar.gz ... checking phenology_10.1.tar.gz ... Depends: Package: HelpersMG Depends: R (>= 4.1), MASS, ggplot2, rlang, coda, Matrix Timings: user system elapsed HelpersMG 90.062 5.774 98.045 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 4 Check results summary: HelpersMG ... OK rdepends_alien ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_BoneProfileR ... OK rdepends_CSeQTL ... OK rdepends_embryogrowth ... OK rdepends_phenology ... OK