* using log directory 'd:/RCompile/CRANincoming/R-devel/HealthMarkers.Rcheck' * using R Under development (unstable) (2026-03-16 r89642 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-03-17 14:09:12 UTC * checking for file 'HealthMarkers/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'HealthMarkers' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [16s] NOTE Maintainer: 'Sufyan Suleman ' New submission Possibly misspelled words in DESCRIPTION: DXA (14:48) anthropometric (15:42) biofluids (17:66) steatosis (15:11) Suggests or Enhances not in mainstream repositories: whoishRisk Availability using Additional_repositories specification: whoishRisk no ? ? ? https://sufyansuleman.r-universe.dev * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: 'whoishRisk' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'HealthMarkers' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [36s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [29s] ERROR Running 'testthat.R' [28s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(HealthMarkers) > > test_check("HealthMarkers") adipo_is(): computed adipose indices adipo_is(): preparing inputs -> adiposity_sds: starting (1 rows, 2 vars) Completed adiposity_sds_strat -> adiposity_sds_strat: processing 2 variables for 1 rows allostatic_load(): computed allostatic load allostatic_load(): computing (rule >) -> alm_bmi_index: computing Completed alm_bmi_index: 1 rows. -> alm_bmi_index: preparing inputs Completed alm_bmi_index: 1 rows. -> bode_index: computing score Completed bode_index: 1 rows. -> bode_index: preparing inputs Completed bode_index: 1 rows. bone_markers(): completed bone_markers(): computing bone markers -> charlson_index: computing Completed charlson_index: 1 rows. -> charlson_index: preparing inputs Completed charlson_index: 1 rows. -> corrected_calcium: computing result Completed corrected_calcium: 1 rows. -> corrected_calcium: preparing inputs Completed corrected_calcium: 1 rows. -> corrected_calcium: preparing inputs -> corrected_calcium: computing result This unofficial R package was based on open-sourced free original QRISK3-2017 algorithm You may find the source code and the official disclaimer of the original open-sourced QRISK3-2017 algorithm (published by ClinRisk Ltd.) from below path by runing following in R sourcePath <- system.file("extdata/QRISK3_2017_src.txt", package = "QRISK3") print(sourcePath) The risk score calculated from this R package can only be used for research purpose. You may want to visit official QRISK3 website for more information https://qrisk.org/ This unofficial R package was based on open-sourced free original QRISK3-2017 algorithm You may find the source code and the official disclaimer of the original open-sourced QRISK3-2017 algorithm (published by ClinRisk Ltd.) from below path by runing following in R sourcePath <- system.file("extdata/QRISK3_2017_src.txt", package = "QRISK3") print(sourcePath) The risk score calculated from this R package can only be used for research purpose. You may want to visit official QRISK3 website for more information https://qrisk.org/ This unofficial R package was based on open-sourced free original QRISK3-2017 algorithm You may find the source code and the official disclaimer of the original open-sourced QRISK3-2017 algorithm (published by ClinRisk Ltd.) from below path by runing following in R sourcePath <- system.file("extdata/QRISK3_2017_src.txt", package = "QRISK3") print(sourcePath) The risk score calculated from this R package can only be used for research purpose. You may want to visit official QRISK3 website for more information https://qrisk.org/ Saving _problems/test-fasting_is-94.R [1] "Please use lower # of bins. Current # is 5" Saving _problems/test-frailty_index-111.R -> frax_score: computing risk Completed frax_score: 1 rows. -> frax_score: preparing inputs Completed frax_score: 1 rows. glycemic_markers: validating inputs -> coercing used columns to numeric Completed glycemic_markers: 1 rows; NA counts -> SPISE=0, METS_IR=1, prediabetes=1, diabetes=1, HOMA_CP=1, LAR=1, ASI=1, TyG_index=1 glycemic_markers: validating inputs -> coercing used columns to numeric -> glycemic_markers: computing markers -> hormone_markers: starting (1 rows, 17 mapped inputs) -> iAge: starting -> iAge: coercing inputs to numeric Completed iAge: 1 rows; NA(iAge)=0 inflammatory_markers(): computed inflammatory indices -> kidney_failure_risk: validating inputs Completed kidney_failure_risk: 1 rows; NA/Inf -> KFRE_2yr=0, KFRE_5yr=0; capped=0; elapsed=0.04s -> kyn_trp_ratio: computing Completed kyn_trp_ratio: 1 rows. -> kyn_trp_ratio: preparing inputs Completed kyn_trp_ratio: 1 rows. -> liver_markers: validating inputs Completed liver_markers: 1 rows; NA/Inf -> FLI=0, NFS=0, APRI=0, FIB4=0, BARD=0, ALBI=0, MELD_XI=0; capped=0; elapsed=0.03s -> liver_markers: validating inputs -> liver_markers: computing indices Completed liver_markers: 1 rows; NA/Inf -> FLI=0, NFS=0, APRI=0, FIB4=0, BARD=0, ALBI=0, MELD_XI=0; capped=0; elapsed=0.05s -> liver_markers: validating inputs -> liver_markers: computing indices -> liver_markers: computing indices Completed liver_markers: 1 rows; NA/Inf -> FLI=0, NFS=0, APRI=0, FIB4=0, BARD=0, ALBI=0, MELD_XI=0; capped=0; elapsed=0.03s -> liver_markers: validating inputs -> liver_markers: computing indices -> metabolic_risk_features: computing flags Completed metabolic_risk_features: 1 rows; NA -> dyslipidemia=0, insulin_resistance=0, hyperglycemia=0, hypertension=0; capped=0; elapsed=0.02s -> metabolic_risk_features: validating inputs -> metabolic_risk_features: computing flags Completed metabolic_risk_features: 1 rows; NA -> dyslipidemia=0, insulin_resistance=0, hyperglycemia=0, hypertension=0; capped=0; elapsed=0.05s -> metss: computing score Completed metss: 1 rows; NA/Inf=0; key=NHW_M; capped=0; elapsed=0.03s -> metss: validating inputs Completed metss: 1 rows; NA/Inf=0; key=NHW_M; capped=0; elapsed=0.03s -> nfl_marker: computing Completed nfl_marker: 2 rows. -> nfl_marker: preparing inputs Completed nfl_marker: 2 rows. -> nutrient_markers: computing markers Completed nutrient_markers: 1 rows; NA/Inf -> FerritinTS=0, AGR=1, Omega3Index=1, Mg_Cr_Ratio=1, GlycatedAlbuminPct=1, UA_Cr_Ratio=1, BUN_Cr_Ratio=1, Ca_x_Phosphate=1, AnionGap=1, Tyr_Phe_Ratio=1; capped=0; denom_zero=0; elapsed=0.01s -> nutrient_markers: validating inputs Completed nutrient_markers: 1 rows; NA/Inf -> FerritinTS=0, AGR=1, Omega3Index=1, Mg_Cr_Ratio=1, GlycatedAlbuminPct=1, UA_Cr_Ratio=1, BUN_Cr_Ratio=1, Ca_x_Phosphate=1, AnionGap=1, Tyr_Phe_Ratio=1; capped=0; denom_zero=0; elapsed=0.01s -> nutrient_markers: validating inputs -> nutrient_markers: computing markers -> nutrient_markers: validating inputs -> nutrient_markers: computing markers Completed nutrient_markers: 1 rows; NA/Inf -> FerritinTS=0, AGR=1, Omega3Index=1, Mg_Cr_Ratio=1, GlycatedAlbuminPct=1, UA_Cr_Ratio=1, BUN_Cr_Ratio=1, Ca_x_Phosphate=1, AnionGap=1, Tyr_Phe_Ratio=1; capped=0; denom_zero=0; elapsed=0.01s -> obesity_indices: computing indices Completed obesity_indices: 2 rows; NA/Inf -> weight_kg=0, height_m=0, BMI=0, BMI_cat=0, WHR=0, waist_to_height_ratio=0, AVI=0, BAI=0, ABSI=0, BRI=0, CI=0, waist_to_BMI_ratio=0, weight_to_height_ratio=0; capped=0; denom_zero=0; elapsed=0.15s -> obesity_indices: validating inputs -> obesity_indices: computing indices -> computing indices Completed ogtt_is: 1 rows; extremes=0 -> ogtt_is: validating and preparing inputs Completed ogtt_is: 1 rows; extremes=0 -> pulmo_markers: converting height from cm to m -> pulmo_markers[GLI]: sex=1; eth=1 -> pulmo_markers: computing markers Completed pulmo_markers[GLI]: 1 rows; NA/Inf -> fev1_pred=0, fev1_z=0, fev1_pctpred=0, fev1_LLN=0, fvc_pred=0, fvc_z=0, fvc_pctpred=0, fvc_LLN=0, fev1_fvc_ratio=0, fev1_fvc_pred=0, fev1_fvc_z=1, fev1_fvc_pctpred=0, fev1_fvc_LLN=1; elapsed=0.16s -> pulmo_markers[GLI]: validating inputs -> pulmo_markers: converting height from cm to m -> pulmo_markers[GLI]: sex=1; eth=1 Completed pulmo_markers[GLI]: 1 rows; NA/Inf -> fev1_pred=0, fev1_z=0, fev1_pctpred=0, fev1_LLN=0, fvc_pred=0, fvc_z=0, fvc_pctpred=0, fvc_LLN=0, fev1_fvc_ratio=0, fev1_fvc_pred=0, fev1_fvc_z=1, fev1_fvc_pctpred=0, fev1_fvc_LLN=1; elapsed=0.16s -> renal_markers: computing markers Completed renal_markers: 1 rows; NA/Inf -> eGFR_cr=0, eGFR_cys=1, eGFR_combined=1, BUN_Cr_ratio=0, FE_Urea=1, NGAL=1, KIM1=1, NAG=1, Beta2Micro=1, IL18=1, L_FABP=1; capped=0; denom_zero=0; elapsed=0.01s -> renal_markers: validating inputs Completed renal_markers: 1 rows; NA/Inf -> eGFR_cr=0, eGFR_cys=1, eGFR_combined=1, BUN_Cr_ratio=0, FE_Urea=1, NGAL=1, KIM1=1, NAG=1, Beta2Micro=1, IL18=1, L_FABP=1; capped=0; denom_zero=0; elapsed=0.01s -> saliva_markers: computing markers Completed saliva_markers: 1 rows; NA/Inf -> log_cortisol_wake=0, CAR_AUC=0, log_amylase=0, saliva_glucose=0; capped=0; elapsed=0.00s -> saliva_markers: validating inputs Completed saliva_markers: 1 rows; NA/Inf -> log_cortisol_wake=0, CAR_AUC=0, log_amylase=0, saliva_glucose=0; capped=0; elapsed=0.01s -> sarc_f_score: computing Completed sarc_f_score: 1 rows. -> sarc_f_score: preparing inputs Completed sarc_f_score: 1 rows. Completed spirometry_markers: 1 rows. -> sweat_markers: computing markers Completed sweat_markers: 1 rows; NA/Inf -> sweat_chloride=0, Na_K_ratio=0, sweat_lactate=0, sweat_rate=0; capped=0; denom_zero=0; elapsed=0.00s -> sweat_markers: validating inputs Completed sweat_markers: 1 rows; NA/Inf -> sweat_chloride=0, Na_K_ratio=0, sweat_lactate=0, sweat_rate=0; capped=0; denom_zero=0; elapsed=0.01s -> tracer_dxa_is: validating inputs Completed tracer_dxa_is: 1 rows; NA/Inf -> LIRI_inv=0, Lipo_inv=0, ATIRI_inv=0; capped=0; denom_zero=0; elapsed=0.01s -> tracer_dxa_is: validating inputs Completed tracer_dxa_is: 1 rows; NA/Inf -> I_AUC=0, FFA_AUC=0, tracer_palmitate_SI=0, tracer_glycerol_SI=0, LIRI_inv=0, Lipo_inv=0, ATIRI_inv=0; capped=0; denom_zero=0; elapsed=0.01s -> urine_markers: validating inputs Completed urine_markers: 1 rows; NA/Inf -> UACR=0, albuminuria_stage=0, microalbuminuria=0, UPCR=1, U_Na_K_ratio=1, NGAL_per_gCr=1, KIM1_per_gCr=1, NAG_per_gCr=1, Beta2Micro_per_gCr=1, A1Micro_per_gCr=1, IL18_per_gCr=1, L_FABP_per_gCr=1; capped=0; denom_zero=0; elapsed=0.01s -> vitamin_d_status: computing status Completed vitamin_d_status: 2 rows. -> vitamin_d_status: preparing inputs Completed vitamin_d_status: 2 rows. -> vitamin_markers: computing markers Completed vitamin_markers: 1 rows; NA/Inf -> VitD_Z=0, B12_Fol_Ratio=0, Ferr_TSat_R=0, Cort_DHEA_R=0, T_E2_Ratio=0, TSH_fT4_R=0, Retinol_Z=0, Toco_Lip_R=0, PIVKA_II=0, VitC=0, Homocysteine=0, MMA=0, Mg_Zn_R=0, Cu_Zn_R=0; capped=0; denom_zero=0; elapsed=0.01s -> vitamin_markers: validating inputs Completed vitamin_markers: 1 rows; NA/Inf -> VitD_Z=0, B12_Fol_Ratio=0, Ferr_TSat_R=0, Cort_DHEA_R=0, T_E2_Ratio=0, TSH_fT4_R=0, Retinol_Z=0, Toco_Lip_R=0, PIVKA_II=0, VitC=0, Homocysteine=0, MMA=0, Mg_Zn_R=0, Cu_Zn_R=0; capped=0; denom_zero=0; elapsed=0.02s -> vitamin_markers: validating inputs -> vitamin_markers: computing markers -> vitamin_markers: validating inputs -> vitamin_markers: computing markers -> vitamin_markers: validating inputs -> vitamin_markers: computing markers [ FAIL 2 | WARN 5 | SKIP 3 | PASS 1319 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • requireNamespace("PooledCohort", quietly = TRUE) is TRUE (1): 'test-cvd_risk.R:155:3' • requireNamespace("QRISK3", quietly = TRUE) is TRUE (1): 'test-cvd_risk.R:183:3' • requireNamespace("RiskScorescvd", quietly = TRUE) is TRUE (1): 'test-cvd_risk.R:195:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-fasting_is.R:89:3'): verbose = TRUE prints a progress/completion message ── Error in `expect_message(fasting_is(df, col_map = list(G0 = "G0", I0 = "I0"), verbose = TRUE), "Completed fasting_is:", fixed = TRUE, all = NA)`: `all` must be `TRUE` or `FALSE`, not `NA`. Backtrace: ▆ 1. └─testthat::expect_message(all = NA) at test-fasting_is.R:89:3 2. └─testthat:::check_bool(all) 3. └─testthat:::stop_input_type(...) 4. └─rlang::abort(message, ..., call = call, arg = arg) ── Error ('test-frailty_index.R:107:3'): frailty_index verbose messages ──────── Error in `expect_message(frailty_index(df, cols = c("d1", "d2"), verbose = TRUE), "frailty_index: completed", all = NA)`: `all` must be `TRUE` or `FALSE`, not `NA`. Backtrace: ▆ 1. └─testthat::expect_message(all = NA) at test-frailty_index.R:107:3 2. └─testthat:::check_bool(all) 3. └─testthat:::stop_input_type(...) 4. └─rlang::abort(message, ..., call = call, arg = arg) [ FAIL 2 | WARN 5 | SKIP 3 | PASS 1319 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [46s] OK * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... [27s] NOTE Found the following HTML validation problems: adiposity_sds_strat.html:133:56 (adiposity_sds_strat.Rd:63): Error: is not recognized! adiposity_sds_strat.html:133:56 (adiposity_sds_strat.Rd:63): Warning: discarding unexpected adiposity_sds_strat.html:133:64 (adiposity_sds_strat.Rd:63): Warning: missing before

adiposity_sds_strat.html:137:1 (adiposity_sds_strat.Rd:81): Warning: inserting implicit adiposity_sds_strat.html:137:1 (adiposity_sds_strat.Rd:81): Warning: missing before

adiposity_sds_strat.html:137:5 (adiposity_sds_strat.Rd:81): Warning: inserting implicit adiposity_sds_strat.html:139:4 (adiposity_sds_strat.Rd:82): Warning: inserting implicit adiposity_sds_strat.html:150:1 (adiposity_sds_strat.Rd:69): Warning: inserting implicit adiposity_sds_strat.html:150:1 (adiposity_sds_strat.Rd:69): Warning: missing before

adiposity_sds_strat.html:150:5 (adiposity_sds_strat.Rd:69): Warning: inserting implicit adiposity_sds_strat.html:162:14 (adiposity_sds_strat.Rd:79): Warning: inserting implicit adiposity_sds_strat.html:137:1 (adiposity_sds_strat.Rd:81): Warning: trimming empty adiposity_sds_strat.html:150:1 (adiposity_sds_strat.Rd:69): Warning: trimming empty adiposity_sds_strat.html:162:14 (adiposity_sds_strat.Rd:79): Warning: trimming empty calc_sds.html:156:44 (calc_sds.Rd:93): Warning: missing before

calc_sds.html:161:1 (calc_sds.Rd:76): Warning: inserting implicit calc_sds.html:161:1 (calc_sds.Rd:76): Warning: missing before

calc_sds.html:161:5 (calc_sds.Rd:76): Warning: inserting implicit calc_sds.html:165:5 (calc_sds.Rd:78): Warning: inserting implicit calc_sds.html:165:5 (calc_sds.Rd:78): Warning: missing before

calc_sds.html:165:8 (calc_sds.Rd:78): Warning: inserting implicit calc_sds.html:167:1 (calc_sds.Rd:79): Warning: inserting implicit calc_sds.html:168:5 (calc_sds.Rd:79): Warning: inserting implicit calc_sds.html:168:5 (calc_sds.Rd:79): Warning: missing before

calc_sds.html:168:8 (calc_sds.Rd:79): Warning: inserting implicit calc_sds.html:171:1 (calc_sds.Rd:81): Warning: inserting implicit calc_sds.html:171:1 (calc_sds.Rd:81): Warning: missing before

    calc_sds.html:172:5 (calc_sds.Rd:81): Warning: inserting implicit calc_sds.html:172:5 (calc_sds.Rd:81): Warning: missing before

    calc_sds.html:172:8 (calc_sds.Rd:81): Warning: inserting implicit calc_sds.html:174:1 (calc_sds.Rd:82): Warning: inserting implicit calc_sds.html:175:5 (calc_sds.Rd:82): Warning: inserting implicit calc_sds.html:175:5 (calc_sds.Rd:82): Warning: missing before

    calc_sds.html:175:8 (calc_sds.Rd:82): Warning: inserting implicit calc_sds.html:177:1 (calc_sds.Rd:83): Warning: inserting implicit calc_sds.html:178:5 (calc_sds.Rd:83): Warning: inserting implicit calc_sds.html:178:5 (calc_sds.Rd:83): Warning: missing before

    calc_sds.html:178:8 (calc_sds.Rd:83): Warning: inserting implicit calc_sds.html:180:1 (calc_sds.Rd:83): Warning: inserting implicit calc_sds.html:186:5 (calc_sds.Rd:118): Warning: inserting implicit calc_sds.html:188:4 (calc_sds.Rd:119): Warning: inserting implicit calc_sds.html:203:1 (calc_sds.Rd:96): Warning: inserting implicit calc_sds.html:203:1 (calc_sds.Rd:96): Warning: missing before

    calc_sds.html:203:5 (calc_sds.Rd:96): Warning: inserting implicit calc_sds.html:225:14 (calc_sds.Rd:116): Warning: inserting implicit calc_sds.html:161:1 (calc_sds.Rd:76): Warning: trimming empty calc_sds.html:165:5 (calc_sds.Rd:78): Warning: trimming empty calc_sds.html:167:1 (calc_sds.Rd:79): Warning: trimming empty calc_sds.html:168:5 (calc_sds.Rd:79): Warning: trimming empty calc_sds.html:171:1 (calc_sds.Rd:81): Warning: trimming empty calc_sds.html:172:5 (calc_sds.Rd:81): Warning: trimming empty calc_sds.html:174:1 (calc_sds.Rd:82): Warning: trimming empty calc_sds.html:175:5 (calc_sds.Rd:82): Warning: trimming empty calc_sds.html:177:1 (calc_sds.Rd:83): Warning: trimming empty calc_sds.html:178:5 (calc_sds.Rd:83): Warning: trimming empty calc_sds.html:180:1 (calc_sds.Rd:83): Warning: trimming empty calc_sds.html:203:1 (calc_sds.Rd:96): Warning: trimming empty calc_sds.html:225:14 (calc_sds.Rd:116): Warning: trimming empty infer_cols.html:166:22 (infer_cols.Rd:69): Error: is not recognized! infer_cols.html:166:22 (infer_cols.Rd:69): Warning: discarding unexpected infer_cols.html:166:42 (infer_cols.Rd:69): Error: is not recognized! infer_cols.html:166:42 (infer_cols.Rd:69): Warning: discarding unexpected kidney_failure_risk.html:162:37 (kidney_failure_risk.Rd:83): Warning: is probably intended as kidney_failure_risk.html:162:81 (kidney_failure_risk.Rd:83): Warning: discarding unexpected kidney_failure_risk.html:162:103 (kidney_failure_risk.Rd:83): Warning: discarding unexpected HealthMarkers.html:672:56 (adiposity_sds_strat.Rd:63): Error: is not recognized! HealthMarkers.html:672:56 (adiposity_sds_strat.Rd:63): Warning: discarding unexpected HealthMarkers.html:672:64 (adiposity_sds_strat.Rd:63): Warning: missing before

    HealthMarkers.html:676:1 (adiposity_sds_strat.Rd:81): Warning: inserting implicit HealthMarkers.html:676:1 (adiposity_sds_strat.Rd:81): Warning: missing before

    HealthMarkers.html:676:5 (adiposity_sds_strat.Rd:81): Warning: inserting implicit HealthMarkers.html:678:4 (adiposity_sds_strat.Rd:82): Warning: inserting implicit HealthMarkers.html:689:1 (adiposity_sds_strat.Rd:69): Warning: inserting implicit HealthMarkers.html:689:1 (adiposity_sds_strat.Rd:69): Warning: missing before

    HealthMarkers.html:689:5 (adiposity_sds_strat.Rd:69): Warning: inserting implicit HealthMarkers.html:701:14 (adiposity_sds_strat.Rd:79): Warning: inserting implicit HealthMarkers.html:701:14 (adiposity_sds_strat.Rd:79): Warning: missing before
    HealthMarkers.html:704:5 (NA:NA): Warning: inserting implicit HealthMarkers.html:704:5 (NA:NA): Warning: missing before

    HealthMarkers.html:705:29 (all_health_markers.Rd:5): Warning: inserting implicit HealthMarkers.html:705:80 (all_health_markers.Rd:5): Warning: inserting implicit HealthMarkers.html:705:80 (all_health_markers.Rd:5): Warning: missing before

    HealthMarkers.html:707:5 (all_health_markers.Rd:44): Warning: inserting implicit HealthMarkers.html:709:4 (all_health_markers.Rd:45): Warning: inserting implicit HealthMarkers.html:713:1 (all_health_markers.Rd:6): Warning: inserting implicit HealthMarkers.html:713:1 (all_health_markers.Rd:6): Warning: missing before

    HealthMarkers.html:713:5 (all_health_markers.Rd:6): Warning: inserting implicit HealthMarkers.html:725:14 (all_health_markers.Rd:16): Warning: inserting implicit HealthMarkers.html:725:14 (all_health_markers.Rd:16): Warning: missing before

    HealthMarkers.html:728:5 (all_health_markers.Rd:18): Warning: inserting implicit HealthMarkers.html:1828:44 (calc_sds.Rd:93): Warning: missing before

    HealthMarkers.html:4557:22 (infer_cols.Rd:69): Error: is not recognized! HealthMarkers.html:4557:22 (infer_cols.Rd:69): Warning: discarding unexpected HealthMarkers.html:4557:42 (infer_cols.Rd:69): Error: is not recognized! HealthMarkers.html:4557:42 (infer_cols.Rd:69): Warning: discarding unexpected HealthMarkers.html:5111:37 (kidney_failure_risk.Rd:83): Warning: is probably intended as HealthMarkers.html:5111:81 (kidney_failure_risk.Rd:83): Warning: discarding unexpected HealthMarkers.html:5111:103 (kidney_failure_risk.Rd:83): Warning: discarding unexpected HealthMarkers.html:676:1 (adiposity_sds_strat.Rd:81): Warning: trimming empty HealthMarkers.html:689:1 (adiposity_sds_strat.Rd:69): Warning: trimming empty HealthMarkers.html:713:1 (all_health_markers.Rd:6): Warning: trimming empty HealthMarkers.html:725:14 (all_health_markers.Rd:16): Warning: trimming empty * DONE Status: 1 ERROR, 2 NOTEs