* using log directory ‘/srv/hornik/tmp/CRAN/HVT.Rcheck’
* using R Under development (unstable) (2023-10-24 r85407)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (15)
    GNU Fortran (Debian 13.2.0-4) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘HVT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HVT’ version ‘3.0.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘"Mu Sigma, Inc." <ird.experiencelab@mu-sigma.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  HVT (10:18)
  Heatmaps (5:9)
  Voronoi (4:34)

Package has a VignetteBuilder field but no prebuilt vignette index.

Size of tarball: 16657075 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HVT’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
Non-standard file/directory found at top level:
  ‘README.html’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/8s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘HVT.Rmd’ ‘HVT.html’ ‘HVT_model_diagnostics_vignette.Rmd’
  ‘HVT_model_diagnostics_vignette.html’ ‘HVT_vignette.Rmd’
  ‘HVT_vignette.html’
  ‘Predicting_Cells_with_Layers_using_predictLayerHVT.Rmd’
  ‘Predicting_Cells_with_Layers_using_predictLayerHVT.html’
  ‘Testing.html’ ‘heatmaps/ads.png’ ‘heatmaps/hd.png’
  ‘heatmaps/price.png’ ‘heatmaps/quant_error.png’ ‘heatmaps/ram.png’
  ‘heatmaps/screen.png’ ‘heatmaps/speed.png’ ‘interactive.png’
  ‘mlayer1.png’ ‘predictLayerHVT_function.png’
  ‘predictLayerHVT_function_mapA.png’
  ‘predictLayerHVT_function_mapB.png’
  ‘predictLayerHVT_function_mapC.png’ ‘quant_explainer.png’
  ‘reference.png’ ‘sample_dataset/Computers.csv’
  ‘sample_dataset/hotel_data_test.csv’
  ‘sample_dataset/hotel_data_train.csv’
  ‘sample_dataset/testComputers.csv’
  ‘sample_dataset/trainComputers.csv’ ‘torus.png’ ‘torus1.png’
  ‘torus2.png’ ‘torus_donut.png’
* checking examples ... [12s/12s] ERROR
Running examples in ‘HVT-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: predictLayerHVT
> ### Title: Predict which cell and what level each point in the test dataset
> ###   belongs to
> ### Aliases: predictLayerHVT
> ### Keywords: predictLayer
> 
> ### ** Examples
> 
> data(USArrests)
> 
> #Split in train and test
> train <- USArrests[1:40,]
> test <- USArrests[41:50,] 
> 
> hvt_mapA <- list()
> hvt_mapA <- HVT(train, min_compression_perc = 70, quant.err = 0.2, 
+                    distance_metric = "L1_Norm", error_metric = "mean",
+                    projection.scale = 10, normalize = TRUE,
+                    quant_method="kmeans")
[1] "For the given dataset 70% compression rate is achieved at n_cells : 17"
> 
> 
> identified_outlier_cells <<- c(2, 10)
> output_list <- removeNovelty(identified_outlier_cells, hvt_mapA)
[1] "The following cell(s) have been removed as novelties from the dataset:  2 10"
> 
> data_with_novelty <- output_list[[1]]
> 
> hvt_mapB <- HVT(data_with_novelty ,n_cells = 3, quant.err = 0.2, 
+                    distance_metric = "L1_Norm", error_metric = "mean",
+                    projection.scale = 10, normalize = TRUE,
+                    quant_method="kmeans")
Error in `select()`:
! Can't subset columns that don't exist.
✖ Column `Cell.ID` doesn't exist.
Backtrace:
     ▆
  1. ├─HVT::HVT(...)
  2. │ └─fin_out[[3]]$summary %>% ...
  3. ├─dplyr::select(...)
  4. ├─dplyr:::select.data.frame(...)
  5. │ └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call)
  6. │   └─tidyselect:::eval_select_impl(...)
  7. │     ├─tidyselect:::with_subscript_errors(...)
  8. │     │ └─rlang::try_fetch(...)
  9. │     │   └─base::withCallingHandlers(...)
 10. │     └─tidyselect:::vars_select_eval(...)
 11. │       └─tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 12. │         └─tidyselect:::eval_c(expr, data_mask, context_mask)
 13. │           └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 14. │             └─tidyselect:::walk_data_tree(new, data_mask, context_mask)
 15. │               └─tidyselect:::as_indices_sel_impl(...)
 16. │                 └─tidyselect:::as_indices_impl(...)
 17. │                   └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg)
 18. │                     └─vctrs::vec_as_location(...)
 19. └─vctrs (local) `<fn>`()
 20.   └─vctrs:::stop_subscript_oob(...)
 21.     └─vctrs:::stop_subscript(...)
 22.       └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/1s] OK
  Running ‘testthat.R’ [1s/1s]
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 2 NOTEs