* using log directory ‘/srv/hornik/tmp/CRAN/HVT.Rcheck’ * using R Under development (unstable) (2024-05-04 r86521) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.4 (1) Debian flang-new version 18.1.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘HVT/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HVT’ version ‘24.5.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/10s] NOTE Maintainer: ‘"Mu Sigma, Inc." ’ Found the following (possibly) invalid URLs: URL: https://www.kaggle.com/datasets/henrychibueze/lorenz-attractor-dataset From: inst/doc/HVT_Temporal_Analysis.html Status: 404 Message: Not Found Size of tarball: 88904008 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HVT’ can be installed ... [7s/7s] WARNING Found the following significant warnings: Warning: replacing previous import ‘gganimate::View’ by ‘utils::View’ when loading ‘HVT’ Warning: replacing previous import ‘utils::View’ by ‘gganimate::View’ when loading ‘HVT’ See ‘/srv/hornik/tmp/CRAN/HVT.Rcheck/00install.out’ for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s/12s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [24s/23s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [2s/2s] OK Running ‘testthat.R’ [2s/2s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [10m/11m] ERROR Error(s) in re-building vignettes: ... --- re-building ‘HVT.Rmd’ using rmarkdown --- finished re-building ‘HVT.Rmd’ --- re-building ‘HVT_Temporal_Analysis.Rmd’ using rmarkdown trying URL 'http://cran.us.r-project.org/src/contrib/numDeriv_2016.8-1.1.tar.gz' Content type 'application/x-gzip' length 76053 bytes (74 KB) ================================================== downloaded 74 KB trying URL 'http://cran.us.r-project.org/src/contrib/SparseM_1.81.tar.gz' Content type 'application/x-gzip' length 735100 bytes (717 KB) ================================================== downloaded 717 KB trying URL 'http://cran.us.r-project.org/src/contrib/MatrixModels_0.5-3.tar.gz' Content type 'application/x-gzip' length 24822 bytes (24 KB) ================================================== downloaded 24 KB trying URL 'http://cran.us.r-project.org/src/contrib/minqa_1.2.6.tar.gz' Content type 'application/x-gzip' length 54493 bytes (53 KB) ================================================== downloaded 53 KB trying URL 'http://cran.us.r-project.org/src/contrib/nloptr_2.0.3.tar.gz' Content type 'application/x-gzip' length 2219877 bytes (2.1 MB) ================================================== downloaded 2.1 MB trying URL 'http://cran.us.r-project.org/src/contrib/terra_1.7-71.tar.gz' Content type 'application/x-gzip' length 836573 bytes (816 KB) ================================================== downloaded 816 KB trying URL 'http://cran.us.r-project.org/src/contrib/carData_3.0-5.tar.gz' Content type 'application/x-gzip' length 1004201 bytes (980 KB) ================================================== downloaded 980 KB trying URL 'http://cran.us.r-project.org/src/contrib/abind_1.4-5.tar.gz' Content type 'application/x-gzip' length 21810 bytes (21 KB) ================================================== downloaded 21 KB trying URL 'http://cran.us.r-project.org/src/contrib/pbkrtest_0.5.2.tar.gz' Content type 'application/x-gzip' length 75295 bytes (73 KB) ================================================== downloaded 73 KB trying URL 'http://cran.us.r-project.org/src/contrib/quantreg_5.97.tar.gz' Content type 'application/x-gzip' length 1026052 bytes (1002 KB) ================================================== downloaded 1002 KB trying URL 'http://cran.us.r-project.org/src/contrib/lme4_1.1-35.3.tar.gz' Content type 'application/x-gzip' length 2942302 bytes (2.8 MB) ================================================== downloaded 2.8 MB trying URL 'http://cran.us.r-project.org/src/contrib/rex_1.2.1.tar.gz' Content type 'application/x-gzip' length 93583 bytes (91 KB) ================================================== downloaded 91 KB trying URL 'http://cran.us.r-project.org/src/contrib/leaflet.providers_2.0.0.tar.gz' Content type 'application/x-gzip' length 34093 bytes (33 KB) ================================================== downloaded 33 KB trying URL 'http://cran.us.r-project.org/src/contrib/png_0.1-8.tar.gz' Content type 'application/x-gzip' length 24880 bytes (24 KB) ================================================== downloaded 24 KB trying URL 'http://cran.us.r-project.org/src/contrib/raster_3.6-26.tar.gz' Content type 'application/x-gzip' length 576421 bytes (562 KB) ================================================== downloaded 562 KB trying URL 'http://cran.us.r-project.org/src/contrib/hunspell_3.0.3.tar.gz' Content type 'application/x-gzip' length 3225883 bytes (3.1 MB) ================================================== downloaded 3.1 MB trying URL 'http://cran.us.r-project.org/src/contrib/qpdf_1.3.3.tar.gz' Content type 'application/x-gzip' length 322562 bytes (315 KB) ================================================== downloaded 315 KB trying URL 'http://cran.us.r-project.org/src/contrib/car_3.1-2.tar.gz' Content type 'application/x-gzip' length 579829 bytes (566 KB) ================================================== downloaded 566 KB trying URL 'http://cran.us.r-project.org/src/contrib/reactR_0.5.0.tar.gz' Content type 'application/x-gzip' length 720252 bytes (703 KB) ================================================== downloaded 703 KB trying URL 'http://cran.us.r-project.org/src/contrib/covr_3.6.4.tar.gz' Content type 'application/x-gzip' length 163362 bytes (159 KB) ================================================== downloaded 159 KB trying URL 'http://cran.us.r-project.org/src/contrib/leaflet_2.2.2.tar.gz' Content type 'application/x-gzip' length 1983642 bytes (1.9 MB) ================================================== downloaded 1.9 MB trying URL 'http://cran.us.r-project.org/src/contrib/sparkline_2.0.tar.gz' Content type 'application/x-gzip' length 204329 bytes (199 KB) ================================================== downloaded 199 KB trying URL 'http://cran.us.r-project.org/src/contrib/tippy_0.1.0.tar.gz' Content type 'application/x-gzip' length 30042 bytes (29 KB) ================================================== downloaded 29 KB trying URL 'http://cran.us.r-project.org/src/contrib/V8_4.4.2.tar.gz' Content type 'application/x-gzip' length 672334 bytes (656 KB) ================================================== downloaded 656 KB trying URL 'http://cran.us.r-project.org/src/contrib/testit_0.13.tar.gz' Content type 'application/x-gzip' length 8493 bytes ================================================== downloaded 8493 bytes trying URL 'http://cran.us.r-project.org/src/contrib/av_0.9.0.tar.gz' Content type 'application/x-gzip' length 752734 bytes (735 KB) ================================================== downloaded 735 KB trying URL 'http://cran.us.r-project.org/src/contrib/spelling_2.3.0.tar.gz' Content type 'application/x-gzip' length 11313 bytes (11 KB) ================================================== downloaded 11 KB trying URL 'http://cran.us.r-project.org/src/contrib/rsvg_2.6.0.tar.gz' Content type 'application/x-gzip' length 260739 bytes (254 KB) ================================================== downloaded 254 KB trying URL 'http://cran.us.r-project.org/src/contrib/webp_1.2.0.tar.gz' Content type 'application/x-gzip' length 17948 bytes (17 KB) ================================================== downloaded 17 KB trying URL 'http://cran.us.r-project.org/src/contrib/pdftools_3.4.0.tar.gz' Content type 'application/x-gzip' length 936466 bytes (914 KB) ================================================== downloaded 914 KB trying URL 'http://cran.us.r-project.org/src/contrib/IRdisplay_1.1.tar.gz' Content type 'application/x-gzip' length 8286 bytes ================================================== downloaded 8286 bytes trying URL 'http://cran.us.r-project.org/src/contrib/tesseract_5.2.1.tar.gz' Content type 'application/x-gzip' length 461424 bytes (450 KB) ================================================== downloaded 450 KB trying URL 'http://cran.us.r-project.org/src/contrib/ggrepel_0.9.5.tar.gz' Content type 'application/x-gzip' length 151033 bytes (147 KB) ================================================== downloaded 147 KB trying URL 'http://cran.us.r-project.org/src/contrib/ggsci_3.0.3.tar.gz' Content type 'application/x-gzip' length 2230340 bytes (2.1 MB) ================================================== downloaded 2.1 MB trying URL 'http://cran.us.r-project.org/src/contrib/cowplot_1.1.3.tar.gz' Content type 'application/x-gzip' length 1350286 bytes (1.3 MB) ================================================== downloaded 1.3 MB trying URL 'http://cran.us.r-project.org/src/contrib/ggsignif_0.6.4.tar.gz' Content type 'application/x-gzip' length 587393 bytes (573 KB) ================================================== downloaded 573 KB trying URL 'http://cran.us.r-project.org/src/contrib/polynom_1.4-1.tar.gz' Content type 'application/x-gzip' length 334803 bytes (326 KB) ================================================== downloaded 326 KB trying URL 'http://cran.us.r-project.org/src/contrib/rstatix_0.7.2.tar.gz' Content type 'application/x-gzip' length 405256 bytes (395 KB) ================================================== downloaded 395 KB trying URL 'http://cran.us.r-project.org/src/contrib/reactable_0.4.4.tar.gz' Content type 'application/x-gzip' length 983022 bytes (959 KB) ================================================== downloaded 959 KB trying URL 'http://cran.us.r-project.org/src/contrib/reshape_0.8.9.tar.gz' Content type 'application/x-gzip' length 41843 bytes (40 KB) ================================================== downloaded 40 KB trying URL 'http://cran.us.r-project.org/src/contrib/gapminder_1.0.0.tar.gz' Content type 'application/x-gzip' length 2202445 bytes (2.1 MB) ================================================== downloaded 2.1 MB trying URL 'http://cran.us.r-project.org/src/contrib/animation_2.7.tar.gz' Content type 'application/x-gzip' length 309845 bytes (302 KB) ================================================== downloaded 302 KB trying URL 'http://cran.us.r-project.org/src/contrib/magick_2.8.3.tar.gz' Content type 'application/x-gzip' length 4600396 bytes (4.4 MB) ================================================== downloaded 4.4 MB trying URL 'http://cran.us.r-project.org/src/contrib/jpeg_0.1-10.tar.gz' Content type 'application/x-gzip' length 18667 bytes (18 KB) ================================================== downloaded 18 KB trying URL 'http://cran.us.r-project.org/src/contrib/ggpubr_0.6.0.tar.gz' Content type 'application/x-gzip' length 1941659 bytes (1.9 MB) ================================================== downloaded 1.9 MB * installing *source* package ‘numDeriv’ ... ** package ‘numDeriv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (numDeriv) * installing *source* package ‘SparseM’ ... ** package ‘SparseM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.4 (1)’ using Fortran compiler: ‘Debian flang-new version 18.1.4 (1)’ flang-new-18 -fpic -g -O2 -c bckslv.f -o bckslv.o flang-new-18 -fpic -g -O2 -c chol.f -o chol.o flang-new-18 -fpic -g -O2 -c chol2csr.f -o chol2csr.o flang-new-18 -fpic -g -O2 -c cholesky.f -o cholesky.o ./cholesky.f:65:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^ ./cholesky.f:717:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^^^^^^^^^ ./cholesky.f:808:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^^^^^^^^^ ./cholesky.f:896:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^^^^^^^^^ ./cholesky.f:922:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^^^^^^^^^ ./cholesky.f:2553:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^ ./cholesky.f:3703:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^ ./cholesky.f:3891:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^ ./cholesky.f:4171:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^ ./cholesky.f:4689:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^ flang-new-18 -fpic -g -O2 -c csr.f -o csr.o flang-new-18 -fpic -g -O2 -c extract.f -o extract.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o flang-new-18 -fpic -g -O2 -c sparskit.f -o sparskit.o flang-new-18 -fpic -g -O2 -c subscr.f -o subscr.o clang-18 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o SparseM.so bckslv.o chol.o chol2csr.o cholesky.o csr.o extract.o init.o sparskit.o subscr.o -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-SparseM/00new/SparseM/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘diag’ from package ‘base’ in package ‘SparseM’ Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘SparseM’ Creating a generic function for ‘norm’ from package ‘base’ in package ‘SparseM’ Creating a new generic function for ‘backsolve’ in package ‘SparseM’ Creating a generic function for ‘forwardsolve’ from package ‘base’ in package ‘SparseM’ Creating a generic function for ‘model.response’ from package ‘stats’ in package ‘SparseM’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SparseM) * installing *source* package ‘MatrixModels’ ... ** package ‘MatrixModels’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixModels) * installing *source* package ‘minqa’ ... ** package ‘minqa’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘Debian flang-new version 18.1.4 (1)’ using C++ compiler: ‘Debian clang version 18.1.4 (1)’ flang-new-18 -fpic -g -O2 -c altmov.f -o altmov.o flang-new-18 -fpic -g -O2 -c bigden.f -o bigden.o flang-new-18 -fpic -g -O2 -c biglag.f -o biglag.o flang-new-18 -fpic -g -O2 -c bobyqa.f -o bobyqa.o flang-new-18 -fpic -g -O2 -c bobyqb.f -o bobyqb.o flang-new-18 -fpic -g -O2 -c lagmax.f -o lagmax.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c minqa.cpp -o minqa.o In file included from minqa.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. flang-new-18 -fpic -g -O2 -c newuoa.f -o newuoa.o flang-new-18 -fpic -g -O2 -c newuob.f -o newuob.o flang-new-18 -fpic -g -O2 -c prelim.f -o prelim.o flang-new-18 -fpic -g -O2 -c rescue.f -o rescue.o flang-new-18 -fpic -g -O2 -c trsapp.f -o trsapp.o flang-new-18 -fpic -g -O2 -c trsbox.f -o trsbox.o flang-new-18 -fpic -g -O2 -c trstep.f -o trstep.o flang-new-18 -fpic -g -O2 -c uobyqa.f -o uobyqa.o flang-new-18 -fpic -g -O2 -c uobyqb.f -o uobyqb.o flang-new-18 -fpic -g -O2 -c update.f -o update.o flang-new-18 -fpic -g -O2 -c updatebobyqa.f -o updatebobyqa.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o minqa.so altmov.o bigden.o biglag.o bobyqa.o bobyqb.o lagmax.o minqa.o newuoa.o newuob.o prelim.o rescue.o trsapp.o trsbox.o trstep.o uobyqa.o uobyqb.o update.o updatebobyqa.o -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-minqa/00new/minqa/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (minqa) * installing *source* package ‘nloptr’ ... ** package ‘nloptr’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++-18 -std=gnu++17 accepts -g... yes checking for clang++-18 -std=gnu++17 option to enable C++11 features... none needed checking how to run the C++ preprocessor... clang++-18 -std=gnu++17 -E checking whether the compiler supports GNU C++... (cached) yes checking whether clang++-18 -std=gnu++17 accepts -g... (cached) yes checking for clang++-18 -std=gnu++17 option to enable C++11 features... (cached) none needed checking for pkg-config... /usr/bin/pkg-config checking if pkg-config knows NLopt... yes checking for pkg-config checking NLopt version... >= 2.7.0 configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 18.1.4 (1)’ using C++ compiler: ‘Debian clang version 18.1.4 (1)’ using C++11 clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../inst/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init_nloptr.c -o init_nloptr.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../inst/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c nloptr.c -o nloptr.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../inst/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c test-C-API.cpp -o test-C-API.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../inst/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c test-runner.cpp -o test-runner.o clang++-18 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o nloptr.so init_nloptr.o nloptr.o test-C-API.o test-runner.o -llapack -L/home/hornik/tmp/R-d-clang-18/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -lnlopt -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-nloptr/00new/nloptr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nloptr) * installing *source* package ‘terra’ ... ** package ‘terra’ successfully unpacked and MD5 sums checked ** using staged installation configure: CC: clang-18 configure: CXX: clang++-18 -std=gnu++17 checking for gdal-config... /usr/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.8.4 checking GDAL version >= 2.0.1... yes checking for gcc... clang-18 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-18 accepts -g... yes checking for clang-18 option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: /usr/share/gdal/pcs.csv readable... no checking GDAL: checking whether PROJ is available for linking:... yes checking GDAL: checking whether PROJ is available for running:... yes configure: GDAL: 3.8.4 configure: pkg-config proj exists, will use it configure: using proj.h. configure: PROJ: 9.4.0 checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes checking for geos-config... /usr/bin/geos-config checking geos-config usability... yes configure: GEOS: 3.12.1 checking GEOS version >= 3.4.0... yes checking for geos_c.h... yes checking geos: linking with -L/usr/lib/x86_64-linux-gnu -lgeos_c... yes configure: Package CPP flags: -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include configure: Package LIBS: -lproj -L/usr/lib/x86_64-linux-gnu -lgdal -L/usr/lib/x86_64-linux-gnu -lgeos_c configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 18.1.4 (1)’ using C++ compiler: ‘Debian clang version 18.1.4 (1)’ using C++17 clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppFunctions.cpp -o RcppFunctions.o In file included from RcppFunctions.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppModule.cpp -o RcppModule.o In file included from RcppModule.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c arith.cpp -o arith.o In file included from arith.cpp:19: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c crs.cpp -o crs.o In file included from crs.cpp:20: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c distRaster.cpp -o distRaster.o In file included from distRaster.cpp:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c distance.cpp -o distance.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c extract.cpp -o extract.o In file included from extract.cpp:20: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c file_utils.cpp -o file_utils.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c focal.cpp -o focal.o In file included from focal.cpp:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c gcp.cpp -o gcp.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c gdal_algs.cpp -o gdal_algs.o In file included from gdal_algs.cpp:25: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c gdal_multidimensional.cpp -o gdal_multidimensional.o In file included from gdal_multidimensional.cpp:2: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c gdalio.cpp -o gdalio.o In file included from gdalio.cpp:5: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c geodesic.c -o geodesic.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c geos_methods.cpp -o geos_methods.o In file included from geos_methods.cpp:20: In file included from ./geos_spat.h:82: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c geosphere.cpp -o geosphere.o In file included from geosphere.cpp:43: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c math_utils.cpp -o math_utils.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c mediancut.cpp -o mediancut.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c memory.cpp -o memory.o In file included from memory.cpp:19: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c movingWindow.cpp -o movingWindow.o In file included from movingWindow.cpp:19: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c ncdf.cpp -o ncdf.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c ram.cpp -o ram.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c raster_methods.cpp -o raster_methods.o In file included from raster_methods.cpp:18: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c raster_stats.cpp -o raster_stats.o In file included from raster_stats.cpp:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c rasterize.cpp -o rasterize.o In file included from rasterize.cpp:4: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c read.cpp -o read.o In file included from read.cpp:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c read_gdal.cpp -o read_gdal.o In file included from read_gdal.cpp:26: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c read_ogr.cpp -o read_ogr.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c sample.cpp -o sample.o In file included from sample.cpp:19: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c sort.cpp -o sort.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c spatBase.cpp -o spatBase.o In file included from spatBase.cpp:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c spatDataframe.cpp -o spatDataframe.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c spatFactor.cpp -o spatFactor.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c spatRaster.cpp -o spatRaster.o In file included from spatRaster.cpp:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c spatRasterMultiple.cpp -o spatRasterMultiple.o In file included from spatRasterMultiple.cpp:18: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c spatSources.cpp -o spatSources.o In file included from spatSources.cpp:19: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c spatTime.cpp -o spatTime.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c spatVector.cpp -o spatVector.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c spatVector2.cpp -o spatVector2.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c string_utils.cpp -o string_utils.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c vecmath.cpp -o vecmath.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c vecmathse.cpp -o vecmathse.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c vector_methods.cpp -o vector_methods.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c write.cpp -o write.o In file included from write.cpp:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c write_gdal.cpp -o write_gdal.o In file included from write_gdal.cpp:18: In file included from ./spatRaster.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c write_ogr.cpp -o write_ogr.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o terra.so RcppExports.o RcppFunctions.o RcppModule.o arith.o crs.o distRaster.o distance.o extract.o file_utils.o focal.o gcp.o gdal_algs.o gdal_multidimensional.o gdalio.o geodesic.o geos_methods.o geosphere.o math_utils.o mediancut.o memory.o movingWindow.o ncdf.o ram.o raster_methods.o raster_stats.o rasterize.o read.o read_gdal.o read_ogr.o sample.o sort.o spatBase.o spatDataframe.o spatFactor.o spatRaster.o spatRasterMultiple.o spatSources.o spatTime.o spatVector.o spatVector2.o string_utils.o vecmath.o vecmathse.o vector_methods.o write.o write_gdal.o write_ogr.o -lproj -L/usr/lib/x86_64-linux-gnu -lgdal -L/usr/lib/x86_64-linux-gnu -lgeos_c -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-terra/00new/terra/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘sds’ with signature ‘x="stars"’: no definition for class “stars” in method for ‘sds’ with signature ‘x="stars_proxy"’: no definition for class “stars_proxy” in method for ‘svc’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘coerce’ with signature ‘"stars","SpatRasterDataset"’: no definition for class “stars” in method for ‘coerce’ with signature ‘"ggmap","SpatRaster"’: no definition for class “ggmap” in method for ‘coerce’ with signature ‘"sf","SpatRaster"’: no definition for class “sf” in method for ‘coerce’ with signature ‘"sf","SpatVector"’: no definition for class “sf” in method for ‘coerce’ with signature ‘"sfc","SpatVector"’: no definition for class “sfc” in method for ‘coerce’ with signature ‘"sfg","SpatVector"’: no definition for class “sfg” in method for ‘coerce’ with signature ‘"XY","SpatVector"’: no definition for class “XY” in method for ‘coerce’ with signature ‘"im","SpatRaster"’: no definition for class “im” in method for ‘coerce’ with signature ‘"SpatVector","Spatial"’: no definition for class “Spatial” in method for ‘coerce’ with signature ‘"Spatial","SpatVector"’: no definition for class “Spatial” in method for ‘coerce’ with signature ‘"SpatialGrid","SpatRaster"’: no definition for class “SpatialGrid” in method for ‘coerce’ with signature ‘"SpatialPixels","SpatRaster"’: no definition for class “SpatialPixels” in method for ‘crs’ with signature ‘"sf"’: no definition for class “sf” Creating a generic function for ‘ncol’ from package ‘base’ in package ‘terra’ in method for ‘distance’ with signature ‘x="SpatRaster",y="sf"’: no definition for class “sf” in method for ‘ext’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘ext’ with signature ‘x="bbox"’: no definition for class “bbox” in method for ‘ext’ with signature ‘x="Extent"’: no definition for class “Extent” in method for ‘ext’ with signature ‘x="Raster"’: no definition for class “Raster” in method for ‘ext’ with signature ‘x="Spatial"’: no definition for class “Spatial” in method for ‘extract’ with signature ‘x="SpatRaster",y="sf"’: no definition for class “sf” in method for ‘mask’ with signature ‘x="SpatRaster",mask="sf"’: no definition for class “sf” in method for ‘points’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘lines’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘polys’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘lines’ with signature ‘x="leaflet"’: no definition for class “leaflet” in method for ‘points’ with signature ‘x="leaflet"’: no definition for class “leaflet” in method for ‘rast’ with signature ‘x="stars"’: no definition for class “stars” in method for ‘rast’ with signature ‘x="stars_proxy"’: no definition for class “stars_proxy” in method for ‘rasterize’ with signature ‘x="sf",y="SpatRaster"’: no definition for class “sf” in method for ‘show’ with signature ‘"Rcpp_SpatDataFrame"’: no definition for class “Rcpp_SpatDataFrame” in method for ‘show’ with signature ‘"Rcpp_SpatCategories"’: no definition for class “Rcpp_SpatCategories” in method for ‘geomtype’ with signature ‘x="Spatial"’: no definition for class “Spatial” Creating a generic function for ‘identical’ from package ‘base’ in package ‘terra’ in method for ‘vect’ with signature ‘x="Spatial"’: no definition for class “Spatial” in method for ‘vect’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘vect’ with signature ‘x="sfc"’: no definition for class “sfc” in method for ‘vect’ with signature ‘x="XY"’: no definition for class “XY” Creating a generic function for ‘unserialize’ from package ‘base’ in package ‘terra’ Creating a generic function for ‘readRDS’ from package ‘base’ in package ‘terra’ ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (terra) * installing *source* package ‘carData’ ... ** package ‘carData’ successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (carData) * installing *source* package ‘abind’ ... ** package ‘abind’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (abind) * installing *source* package ‘rex’ ... ** package ‘rex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rex) * installing *source* package ‘leaflet.providers’ ... ** package ‘leaflet.providers’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leaflet.providers) * installing *source* package ‘png’ ... ** package ‘png’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.4 (1)’ clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O3 -Wall -pedantic -c dummy.c -o dummy.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O3 -Wall -pedantic -c read.c -o read.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O3 -Wall -pedantic -c write.c -o write.o clang-18 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o png.so dummy.o read.o write.o -lpng16 -lm -lz -lm -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-png/00new/png/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (png) * installing *source* package ‘hunspell’ ... ** package ‘hunspell’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from ./hunspell_types.h:1: In file included from ./dictionary.h:5: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c dictionary.cpp -o dictionary.o In file included from dictionary.cpp:1: In file included from ./hunspell_types.h:1: In file included from ./dictionary.h:5: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c parser.cpp -o parser.o In file included from parser.cpp:13: In file included from ./hunspell_types.h:1: In file included from ./dictionary.h:5: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c parsers/textparser.cc -o parsers/textparser.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c parsers/latexparser.cc -o parsers/latexparser.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c parsers/manparser.cc -o parsers/manparser.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c parsers/xmlparser.cc -o parsers/xmlparser.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c parsers/htmlparser.cc -o parsers/htmlparser.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hunspell/affentry.cc -o hunspell/affentry.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hunspell/affixmgr.cc -o hunspell/affixmgr.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hunspell/filemgr.cc -o hunspell/filemgr.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hunspell/hashmgr.cc -o hunspell/hashmgr.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hunspell/hunspell.cc -o hunspell/hunspell.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hunspell/hunzip.cc -o hunspell/hunzip.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hunspell/phonet.cc -o hunspell/phonet.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hunspell/replist.cc -o hunspell/replist.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hunspell/suggestmgr.cc -o hunspell/suggestmgr.o hunspell/suggestmgr.cc:1950:7: warning: variable 'test' set but not used [-Wunused-but-set-variable] 1950 | int test = 0; | ^ hunspell/suggestmgr.cc:2002:7: warning: variable 'test' set but not used [-Wunused-but-set-variable] 2002 | int test = 0; | ^ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hunspell/csutil.cc -o hunspell/csutil.o ar rcs hunspell/libstathunspell.a parsers/textparser.o parsers/latexparser.o parsers/manparser.o parsers/xmlparser.o parsers/htmlparser.o hunspell/affentry.o hunspell/affixmgr.o hunspell/filemgr.o hunspell/hashmgr.o hunspell/hunspell.o hunspell/hunzip.o hunspell/phonet.o hunspell/replist.o hunspell/suggestmgr.o hunspell/csutil.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o hunspell.so RcppExports.o dictionary.o parser.o -Lhunspell -lstathunspell -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-hunspell/00new/hunspell/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hunspell) * installing *source* package ‘qpdf’ ... ** package ‘qpdf’ successfully unpacked and MD5 sums checked ** using staged installation Using bundled qpdf (recommended) ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c bindings.cpp -o bindings.o In file included from bindings.cpp:6: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/BitStream.cc -o libqpdf/BitStream.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/BitWriter.cc -o libqpdf/BitWriter.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Buffer.cc -o libqpdf/Buffer.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/BufferInputSource.cc -o libqpdf/BufferInputSource.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/ClosedFileInputSource.cc -o libqpdf/ClosedFileInputSource.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/ContentNormalizer.cc -o libqpdf/ContentNormalizer.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/FileInputSource.cc -o libqpdf/FileInputSource.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/InputSource.cc -o libqpdf/InputSource.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/InsecureRandomDataProvider.cc -o libqpdf/InsecureRandomDataProvider.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/JSON.cc -o libqpdf/JSON.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/MD5.cc -o libqpdf/MD5.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/OffsetInputSource.cc -o libqpdf/OffsetInputSource.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pipeline.cc -o libqpdf/Pipeline.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_AES_PDF.cc -o libqpdf/Pl_AES_PDF.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_ASCII85Decoder.cc -o libqpdf/Pl_ASCII85Decoder.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_ASCIIHexDecoder.cc -o libqpdf/Pl_ASCIIHexDecoder.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_Buffer.cc -o libqpdf/Pl_Buffer.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_Concatenate.cc -o libqpdf/Pl_Concatenate.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_Count.cc -o libqpdf/Pl_Count.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_DCT.cc -o libqpdf/Pl_DCT.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_Discard.cc -o libqpdf/Pl_Discard.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_Flate.cc -o libqpdf/Pl_Flate.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_LZWDecoder.cc -o libqpdf/Pl_LZWDecoder.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_MD5.cc -o libqpdf/Pl_MD5.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_PNGFilter.cc -o libqpdf/Pl_PNGFilter.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_QPDFTokenizer.cc -o libqpdf/Pl_QPDFTokenizer.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_RC4.cc -o libqpdf/Pl_RC4.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_RunLength.cc -o libqpdf/Pl_RunLength.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_SHA2.cc -o libqpdf/Pl_SHA2.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_StdioFile.cc -o libqpdf/Pl_StdioFile.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/Pl_TIFFPredictor.cc -o libqpdf/Pl_TIFFPredictor.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_Array.cc -o libqpdf/QPDF_Array.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_Bool.cc -o libqpdf/QPDF_Bool.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_Dictionary.cc -o libqpdf/QPDF_Dictionary.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_encryption.cc -o libqpdf/QPDF_encryption.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_InlineImage.cc -o libqpdf/QPDF_InlineImage.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_Integer.cc -o libqpdf/QPDF_Integer.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_linearization.cc -o libqpdf/QPDF_linearization.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_Name.cc -o libqpdf/QPDF_Name.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_Null.cc -o libqpdf/QPDF_Null.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_Operator.cc -o libqpdf/QPDF_Operator.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_optimization.cc -o libqpdf/QPDF_optimization.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_pages.cc -o libqpdf/QPDF_pages.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_Real.cc -o libqpdf/QPDF_Real.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_Reserved.cc -o libqpdf/QPDF_Reserved.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_Stream.cc -o libqpdf/QPDF_Stream.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF_String.cc -o libqpdf/QPDF_String.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/qpdf-c.cc -o libqpdf/qpdf-c.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDF.cc -o libqpdf/QPDF.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFAcroFormDocumentHelper.cc -o libqpdf/QPDFAcroFormDocumentHelper.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFAnnotationObjectHelper.cc -o libqpdf/QPDFAnnotationObjectHelper.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFExc.cc -o libqpdf/QPDFExc.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFFormFieldObjectHelper.cc -o libqpdf/QPDFFormFieldObjectHelper.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFMatrix.cc -o libqpdf/QPDFMatrix.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFNameTreeObjectHelper.cc -o libqpdf/QPDFNameTreeObjectHelper.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFNumberTreeObjectHelper.cc -o libqpdf/QPDFNumberTreeObjectHelper.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFObject.cc -o libqpdf/QPDFObject.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFObjectHandle.cc -o libqpdf/QPDFObjectHandle.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFObjGen.cc -o libqpdf/QPDFObjGen.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFOutlineDocumentHelper.cc -o libqpdf/QPDFOutlineDocumentHelper.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFOutlineObjectHelper.cc -o libqpdf/QPDFOutlineObjectHelper.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFPageDocumentHelper.cc -o libqpdf/QPDFPageDocumentHelper.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFPageLabelDocumentHelper.cc -o libqpdf/QPDFPageLabelDocumentHelper.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFPageObjectHelper.cc -o libqpdf/QPDFPageObjectHelper.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFSystemError.cc -o libqpdf/QPDFSystemError.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFTokenizer.cc -o libqpdf/QPDFTokenizer.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFWriter.cc -o libqpdf/QPDFWriter.o libqpdf/QPDFWriter.cc:3089:9: warning: unused variable 'after_part4' [-Wunused-variable] 3089 | int after_part4 = this->m->next_objid; | ^~~~~~~~~~~ libqpdf/QPDFWriter.cc:3097:9: warning: unused variable 'after_part6' [-Wunused-variable] 3097 | int after_part6 = this->m->next_objid; | ^~~~~~~~~~~ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QPDFXRefEntry.cc -o libqpdf/QPDFXRefEntry.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QTC.cc -o libqpdf/QTC.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/QUtil.cc -o libqpdf/QUtil.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/RC4.cc -o libqpdf/RC4.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/rijndael.cc -o libqpdf/rijndael.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c libqpdf/SecureRandomDataProvider.cc -o libqpdf/SecureRandomDataProvider.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c libqpdf/sha2.c -o libqpdf/sha2.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c libqpdf/sha2big.c -o libqpdf/sha2big.o ar rcs libqpdf/libstatqpdf.a libqpdf/BitStream.o libqpdf/BitWriter.o libqpdf/Buffer.o libqpdf/BufferInputSource.o libqpdf/ClosedFileInputSource.o libqpdf/ContentNormalizer.o libqpdf/FileInputSource.o libqpdf/InputSource.o libqpdf/InsecureRandomDataProvider.o libqpdf/JSON.o libqpdf/MD5.o libqpdf/OffsetInputSource.o libqpdf/Pipeline.o libqpdf/Pl_AES_PDF.o libqpdf/Pl_ASCII85Decoder.o libqpdf/Pl_ASCIIHexDecoder.o libqpdf/Pl_Buffer.o libqpdf/Pl_Concatenate.o libqpdf/Pl_Count.o libqpdf/Pl_DCT.o libqpdf/Pl_Discard.o libqpdf/Pl_Flate.o libqpdf/Pl_LZWDecoder.o libqpdf/Pl_MD5.o libqpdf/Pl_PNGFilter.o libqpdf/Pl_QPDFTokenizer.o libqpdf/Pl_RC4.o libqpdf/Pl_RunLength.o libqpdf/Pl_SHA2.o libqpdf/Pl_StdioFile.o libqpdf/Pl_TIFFPredictor.o libqpdf/QPDF_Array.o libqpdf/QPDF_Bool.o libqpdf/QPDF_Dictionary.o libqpdf/QPDF_encryption.o libqpdf/QPDF_InlineImage.o libqpdf/QPDF_Integer.o libqpdf/QPDF_linearization.o libqpdf/QPDF_Name.o libqpdf/QPDF_Null.o libqpdf/QPDF_Operator.o libqpdf/QPDF_optimization.o libqpdf/QPDF_pages.o libqpdf/QPDF_Real.o libqpdf/QPDF_Reserved.o libqpdf/QPDF_Stream.o libqpdf/QPDF_String.o libqpdf/qpdf-c.o libqpdf/QPDF.o libqpdf/QPDFAcroFormDocumentHelper.o libqpdf/QPDFAnnotationObjectHelper.o libqpdf/QPDFExc.o libqpdf/QPDFFormFieldObjectHelper.o libqpdf/QPDFMatrix.o libqpdf/QPDFNameTreeObjectHelper.o libqpdf/QPDFNumberTreeObjectHelper.o libqpdf/QPDFObject.o libqpdf/QPDFObjectHandle.o libqpdf/QPDFObjGen.o libqpdf/QPDFOutlineDocumentHelper.o libqpdf/QPDFOutlineObjectHelper.o libqpdf/QPDFPageDocumentHelper.o libqpdf/QPDFPageLabelDocumentHelper.o libqpdf/QPDFPageObjectHelper.o libqpdf/QPDFSystemError.o libqpdf/QPDFTokenizer.o libqpdf/QPDFWriter.o libqpdf/QPDFXRefEntry.o libqpdf/QTC.o libqpdf/QUtil.o libqpdf/RC4.o libqpdf/rijndael.o libqpdf/SecureRandomDataProvider.o libqpdf/sha2.o libqpdf/sha2big.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o qpdf.so RcppExports.o bindings.o -Llibqpdf -lstatqpdf -ljpeg -lz -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-qpdf/00new/qpdf/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qpdf) * installing *source* package ‘reactR’ ... ** package ‘reactR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactR) * installing *source* package ‘sparkline’ ... ** package ‘sparkline’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparkline) * installing *source* package ‘tippy’ ... ** package ‘tippy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tippy) * installing *source* package ‘V8’ ... ** package ‘V8’ successfully unpacked and MD5 sums checked ** using staged installation Found C++17 compiler: clang++-18 Using CXXCPP=clang++-18 -std=gnu++17 -E Using PKG_CFLAGS=-I/usr/include/v8 Using PKG_LIBS=-lv8 -lv8_libplatform Running feature test for pointer compression... Pointer compression not needed ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ using C++17 rm -f V8.so RcppExports.o bindings.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/v8 -DV8_ENABLE_CHECKS -DISNODEJS=10.2.154.26-node.36 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from ./V8_types.h:2: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/v8 -DV8_ENABLE_CHECKS -DISNODEJS=10.2.154.26-node.36 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c bindings.cpp -o bindings.o In file included from bindings.cpp:2: In file included from ./V8_types.h:2: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o V8.so RcppExports.o bindings.o -lv8 -lv8_libplatform -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-V8/00new/V8/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (V8) * installing *source* package ‘testit’ ... ** package ‘testit’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (testit) * installing *source* package ‘av’ ... ** package ‘av’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu Using PKG_LIBS=-lavfilter ** libs using C compiler: ‘Debian clang version 18.1.4 (1)’ rm -f av.so fft.o formats.o info.o init.o video.o winfunc.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fft.c -o fft.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c formats.c -o formats.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c info.c -o info.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c video.c -o video.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c winfunc.c -o winfunc.o clang-18 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o av.so fft.o formats.o info.o init.o video.o winfunc.o -lavfilter -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-av/00new/av/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (av) * installing *source* package ‘rsvg’ ... ** package ‘rsvg’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/librsvg-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -pthread -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/pixman-1 Using PKG_LIBS=-lrsvg-2 -lm -lgio-2.0 -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lcairo ** libs using C compiler: ‘Debian clang version 18.1.4 (1)’ clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/librsvg-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -pthread -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rsvg.c -o rsvg.o clang-18 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o rsvg.so rsvg.o -lrsvg-2 -lm -lgio-2.0 -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lcairo -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-rsvg/00new/rsvg/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rsvg) * installing *source* package ‘webp’ ... ** package ‘webp’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/webp Using PKG_LIBS=-lwebp ** libs using C compiler: ‘Debian clang version 18.1.4 (1)’ clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/webp -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c register.c -o register.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/webp -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c webp.c -o webp.o clang-18 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o webp.so register.o webp.o -lwebp -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-webp/00new/webp/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (webp) * installing *source* package ‘IRdisplay’ ... ** package ‘IRdisplay’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRdisplay) * installing *source* package ‘ggrepel’ ... ** package ‘ggrepel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c repel_boxes.cpp -o repel_boxes.o In file included from repel_boxes.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o ggrepel.so RcppExports.o repel_boxes.o -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-ggrepel/00new/ggrepel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggrepel) * installing *source* package ‘ggsci’ ... ** package ‘ggsci’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggsci) * installing *source* package ‘cowplot’ ... ** package ‘cowplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cowplot) * installing *source* package ‘ggsignif’ ... ** package ‘ggsignif’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggsignif) * installing *source* package ‘polynom’ ... ** package ‘polynom’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (polynom) * installing *source* package ‘reshape’ ... ** package ‘reshape’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reshape) * installing *source* package ‘gapminder’ ... ** package ‘gapminder’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gapminder) * installing *source* package ‘magick’ ... ** package ‘magick’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 Using PKG_LIBS=-lMagick++-6.Q16 -lMagickWand-6.Q16 -lMagickCore-6.Q16 ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c animation.cpp -o animation.o In file included from animation.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c attributes.cpp -o attributes.o In file included from attributes.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c base.cpp -o base.o In file included from base.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c color.cpp -o color.o In file included from color.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c composite.cpp -o composite.o In file included from composite.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c config.cc -o config.o In file included from config.cc:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c convolve.cpp -o convolve.o In file included from convolve.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c device.cpp -o device.o In file included from device.cpp:9: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c edges.cpp -o edges.o In file included from edges.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c edit.cpp -o edit.o In file included from edit.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c fonts.cpp -o fonts.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c options.cpp -o options.o In file included from options.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c properties.cpp -o properties.o In file included from properties.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c resize.cpp -o resize.o In file included from resize.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c segment.cpp -o segment.o In file included from segment.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c transformations.cpp -o transformations.o In file included from transformations.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :6:9: note: previous definition is here 6 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o magick.so RcppExports.o animation.o attributes.o base.o color.o composite.o config.o convolve.o device.o edges.o edit.o fonts.o options.o properties.o resize.o segment.o transformations.o -lMagick++-6.Q16 -lMagickWand-6.Q16 -lMagickCore-6.Q16 -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-magick/00new/magick/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magick) * installing *source* package ‘jpeg’ ... ** package ‘jpeg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.4 (1)’ clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read.c -o read.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reg.c -o reg.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write.c -o write.o clang-18 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o jpeg.so read.o reg.o write.o -ljpeg -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-jpeg/00new/jpeg/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jpeg) ERROR: dependency ‘survival’ is not available for package ‘quantreg’ * removing ‘/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/quantreg’ ERROR: dependency ‘boot’ is not available for package ‘lme4’ * removing ‘/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/lme4’ * installing *source* package ‘raster’ ... ** package ‘raster’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.4 (1)’ using C++ compiler: ‘Debian clang version 18.1.4 (1)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RasterModule.cpp -o RasterModule.o In file included from RasterModule.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c aggregate.cpp -o aggregate.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c bilinear.cpp -o bilinear.o In file included from bilinear.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c broom.cpp -o broom.o In file included from broom.cpp:6: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c cellRowCol.cpp -o cellRowCol.o In file included from cellRowCol.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c clamp.cpp -o clamp.o In file included from clamp.cpp:3: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c distance.cpp -o distance.o In file included from distance.cpp:6: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c edge.cpp -o edge.o In file included from edge.cpp:3: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c focal_fun.cpp -o focal_fun.o In file included from focal_fun.cpp:3: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c focal_get.cpp -o focal_get.o In file included from focal_get.cpp:3: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c focal_sum.cpp -o focal_sum.o In file included from focal_sum.cpp:3: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c geodesic.c -o geodesic.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c getPolygons.cpp -o getPolygons.o In file included from getPolygons.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c layerize.cpp -o layerize.o In file included from layerize.cpp:3: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c memory.cpp -o memory.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c modal.cpp -o modal.o In file included from modal.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c ppmin.cpp -o ppmin.o In file included from ppmin.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c raster_aggregate.cpp -o raster_aggregate.o In file included from raster_aggregate.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c raster_distance.cpp -o raster_distance.o In file included from raster_distance.cpp:5: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c rasterize.cpp -o rasterize.o In file included from rasterize.cpp:6: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c reclass.cpp -o reclass.o In file included from reclass.cpp:3: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c terrain.cpp -o terrain.o In file included from terrain.cpp:2: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c util.cpp -o util.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xyCell.cpp -o xyCell.o In file included from xyCell.cpp:1: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o raster.so RasterModule.o RcppExports.o aggregate.o bilinear.o broom.o cellRowCol.o clamp.o distance.o edge.o focal_fun.o focal_get.o focal_sum.o geodesic.o getPolygons.o layerize.o memory.o modal.o ppmin.o raster_aggregate.o raster_distance.o rasterize.o reclass.o terrain.o util.o xyCell.o -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-raster/00new/raster/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘initialize’ with signature ‘"BasicRaster"’: no definition for class “BasicRaster” in method for ‘brick’ with signature ‘x="kasc"’: no definition for class “kasc” in method for ‘brick’ with signature ‘x="grf"’: no definition for class “grf” in method for ‘coerce’ with signature ‘"STFDF","RasterBrick"’: no definition for class “STFDF” in method for ‘coerce’ with signature ‘"STSDF","RasterBrick"’: no definition for class “STSDF” in method for ‘coerce’ with signature ‘"asc","RasterLayer"’: no definition for class “asc” in method for ‘coerce’ with signature ‘"RasterLayer","asc"’: no definition for class “asc” in method for ‘coerce’ with signature ‘"kasc","RasterBrick"’: no definition for class “kasc” in method for ‘coerce’ with signature ‘"kasc","RasterStack"’: no definition for class “kasc” in method for ‘coerce’ with signature ‘"kde","RasterLayer"’: no definition for class “kde” in method for ‘coerce’ with signature ‘"grf","RasterBrick"’: no definition for class “grf” in method for ‘coerce’ with signature ‘"grf","RasterLayer"’: no definition for class “grf” in method for ‘extent’ with signature ‘x="bbox"’: no definition for class “bbox” in method for ‘extent’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘extract’ with signature ‘x="Raster",y="sf"’: no definition for class “sf” in method for ‘mask’ with signature ‘x="Raster",mask="sf"’: no definition for class “sf” in method for ‘raster’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘raster’ with signature ‘x="kasc"’: no definition for class “kasc” in method for ‘raster’ with signature ‘x="asc"’: no definition for class “asc” in method for ‘raster’ with signature ‘x="kde"’: no definition for class “kde” in method for ‘raster’ with signature ‘x="grf"’: no definition for class “grf” in method for ‘rasterize’ with signature ‘x="sf",y="Raster"’: no definition for class “sf” Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘raster’ Creating a generic function for ‘colSums’ from package ‘base’ in package ‘raster’ in method for ‘setValues’ with signature ‘x="RasterLayerSparse"’: no definition for class “RasterLayerSparse” in method for ‘stack’ with signature ‘x="kasc"’: no definition for class “kasc” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (raster) * installing *source* package ‘covr’ ... ** package ‘covr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.4 (1)’ clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reassign.c -o reassign.o clang-18 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o covr.so reassign.o -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-covr/00new/covr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (covr) * installing *source* package ‘spelling’ ... ** package ‘spelling’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spelling) * installing *source* package ‘pdftools’ ... ** package ‘pdftools’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/poppler/cpp -I/usr/include/poppler Using PKG_LIBS=-lpoppler-cpp ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/poppler/cpp -I/usr/include/poppler -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp.h:27: In file included from /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/RcppCommon.h:30: /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/poppler/cpp -I/usr/include/poppler -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c bindings.cpp -o bindings.o bindings.cpp:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o pdftools.so RcppExports.o bindings.o -lpoppler-cpp -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-pdftools/00new/pdftools/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pdftools) * installing *source* package ‘reactable’ ... ** package ‘reactable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactable) * installing *source* package ‘animation’ ... ** package ‘animation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (animation) ERROR: dependency ‘lme4’ is not available for package ‘pbkrtest’ * removing ‘/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/pbkrtest’ * installing *source* package ‘leaflet’ ... ** package ‘leaflet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leaflet) * installing *source* package ‘tesseract’ ... ** package ‘tesseract’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/leptonica Using PKG_LIBS=-ltesseract -larchive -lcurl Using CXX11CPP: clang++-18 -E -std=gnu++11 ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ rm -f tesseract.so RcppExports.o tesseract.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/leptonica -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: ./tesseract_types.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I/usr/include/leptonica -I'/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c tesseract.cpp -o tesseract.o In file included from tesseract.cpp:1: ./tesseract_types.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o tesseract.so RcppExports.o tesseract.o -ltesseract -larchive -lcurl -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/00LOCK-tesseract/00new/tesseract/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tesseract) ERROR: dependencies ‘pbkrtest’, ‘quantreg’, ‘lme4’ are not available for package ‘car’ * removing ‘/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/car’ ERROR: dependency ‘car’ is not available for package ‘rstatix’ * removing ‘/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/rstatix’ ERROR: dependency ‘rstatix’ is not available for package ‘ggpubr’ * removing ‘/tmp/RtmphlF8Zr/RLIBS_1c54af5dc8854c/ggpubr’ The downloaded source packages are in '/tmp/RtmphlF8Zr/working_dir/Rtmp9dR8gL/downloaded_packages' Quitting from lines at lines 65-111 [unnamed-chunk-2] (HVT_Temporal_Analysis.Rmd) Error: processing vignette 'HVT_Temporal_Analysis.Rmd' failed with diagnostics: there is no package called 'ggpubr' --- failed re-building ‘HVT_Temporal_Analysis.Rmd’ SUMMARY: processing the following file failed: ‘HVT_Temporal_Analysis.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING, 1 NOTE