* using log directory ‘/srv/hornik/tmp/CRAN/HVT.Rcheck’ * using R Under development (unstable) (2023-10-24 r85407) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (15) GNU Fortran (Debian 13.2.0-4) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘HVT/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HVT’ version ‘23.10.01’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/4s] NOTE Maintainer: ‘"Mu Sigma, Inc." ’ New submission Version contains leading zeroes (23.10.01) Possibly misspelled words in DESCRIPTION: HVT (10:18) Heatmaps (5:9) Voronoi (4:34) Size of tarball: 17515416 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HVT’ can be installed ... [4s/4s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s/8s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [15s/15s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [1s/1s] OK Running ‘testthat.R’ [1s/1s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [8m/11m] ERROR Error(s) in re-building vignettes: ... --- re-building ‘HVT.Rmd’ using rmarkdown --- finished re-building ‘HVT.Rmd’ --- re-building ‘HVT_model_diagnostics_vignette.Rmd’ using rmarkdown Quitting from lines 155-203 [lib] (HVT_model_diagnostics_vignette.Rmd) Error: processing vignette 'HVT_model_diagnostics_vignette.Rmd' failed with diagnostics: there is no package called 'gganimate' --- failed re-building ‘HVT_model_diagnostics_vignette.Rmd’ --- re-building ‘HVT_vignette.Rmd’ using rmarkdown --- finished re-building ‘HVT_vignette.Rmd’ --- re-building ‘Predicting_Cells_with_Layers_using_predictLayerHVT.Rmd’ using rmarkdown * installing *source* package ‘terra’ ... ** package ‘terra’ successfully unpacked and MD5 sums checked ** using staged installation configure: CC: clang-16 configure: CXX: clang++-16 -std=gnu++17 checking for gdal-config... /usr/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.7.2 checking GDAL version >= 2.0.1... yes checking for gcc... clang-16 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-16 accepts -g... yes checking for clang-16 option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: /usr/share/gdal/pcs.csv readable... no checking GDAL: checking whether PROJ is available for linking:... yes checking GDAL: checking whether PROJ is available for running:... yes configure: GDAL: 3.7.2 configure: pkg-config proj exists, will use it configure: using proj.h. configure: PROJ: 9.3.0 checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes checking for geos-config... /usr/bin/geos-config checking geos-config usability... yes configure: GEOS: 3.12.0 checking GEOS version >= 3.4.0... yes checking for geos_c.h... yes checking geos: linking with -L/usr/lib/x86_64-linux-gnu -lgeos_c... yes configure: Package CPP flags: -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include configure: Package LIBS: -lproj -L/usr/lib/x86_64-linux-gnu -lgdal -L/usr/lib/x86_64-linux-gnu -lgeos_c configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 16.0.6 (16)’ using C++ compiler: ‘Debian clang version 16.0.6 (16)’ using C++17 clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppFunctions.cpp -o RcppFunctions.o In file included from RcppFunctions.cpp:2: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppModule.cpp -o RcppModule.o In file included from RcppModule.cpp:3: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c arith.cpp -o arith.o In file included from arith.cpp:19: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crs.cpp -o crs.o In file included from crs.cpp:20: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distRaster.cpp -o distRaster.o In file included from distRaster.cpp:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distance.cpp -o distance.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c extract.cpp -o extract.o In file included from extract.cpp:20: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c file_utils.cpp -o file_utils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c focal.cpp -o focal.o In file included from focal.cpp:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gcp.cpp -o gcp.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gdal_algs.cpp -o gdal_algs.o In file included from gdal_algs.cpp:25: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gdal_multidimensional.cpp -o gdal_multidimensional.o In file included from gdal_multidimensional.cpp:2: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gdalio.cpp -o gdalio.o gdalio.cpp:450:22: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709550514 to 18446744073709549568 [-Wimplicit-const-int-float-conversion] naval = UINT64_MAX - 1101; ~ ~~~~~~~~~~~^~~~~~ In file included from gdalio.cpp:5: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 7 warnings generated. clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c geodesic.c -o geodesic.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c geos_methods.cpp -o geos_methods.o In file included from geos_methods.cpp:20: In file included from ./geos_spat.h:48: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c geosphere.cpp -o geosphere.o In file included from geosphere.cpp:18: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c math_utils.cpp -o math_utils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mediancut.cpp -o mediancut.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c memory.cpp -o memory.o In file included from memory.cpp:19: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c movingWindow.cpp -o movingWindow.o In file included from movingWindow.cpp:19: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ncdf.cpp -o ncdf.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ram.cpp -o ram.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raster_methods.cpp -o raster_methods.o In file included from raster_methods.cpp:18: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raster_stats.cpp -o raster_stats.o In file included from raster_stats.cpp:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rasterize.cpp -o rasterize.o In file included from rasterize.cpp:4: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read.cpp -o read.o In file included from read.cpp:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_gdal.cpp -o read_gdal.o In file included from read_gdal.cpp:26: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_ogr.cpp -o read_ogr.o In file included from read_ogr.cpp:19: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sample.cpp -o sample.o In file included from sample.cpp:19: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sort.cpp -o sort.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spatBase.cpp -o spatBase.o In file included from spatBase.cpp:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spatDataframe.cpp -o spatDataframe.o In file included from spatDataframe.cpp:18: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spatFactor.cpp -o spatFactor.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spatRaster.cpp -o spatRaster.o In file included from spatRaster.cpp:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spatRasterMultiple.cpp -o spatRasterMultiple.o In file included from spatRasterMultiple.cpp:18: In file included from ./spatRasterMultiple.h:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spatSources.cpp -o spatSources.o In file included from spatSources.cpp:19: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spatTime.cpp -o spatTime.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spatVector.cpp -o spatVector.o In file included from spatVector.cpp:18: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spatVector2.cpp -o spatVector2.o In file included from spatVector2.cpp:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c string_utils.cpp -o string_utils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vecmath.cpp -o vecmath.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vecmathse.cpp -o vecmathse.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vector_methods.cpp -o vector_methods.o In file included from vector_methods.cpp:18: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write.cpp -o write.o In file included from write.cpp:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_gdal.cpp -o write_gdal.o In file included from write_gdal.cpp:18: In file included from ./spatRaster.h:20: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_ogr.cpp -o write_ogr.o In file included from write_ogr.cpp:18: In file included from ./spatVector.h:21: In file included from ./spatDataframe.h:26: ./spatTime.h:39:7: warning: private field 'year' is not used [-Wunused-private-field] long year; ^ ./spatTime.h:40:12: warning: private field 'month' is not used [-Wunused-private-field] short int month; ^ ./spatTime.h:41:12: warning: private field 'day' is not used [-Wunused-private-field] short int day; ^ ./spatTime.h:42:12: warning: private field 'hour' is not used [-Wunused-private-field] short int hour; ^ ./spatTime.h:43:12: warning: private field 'minute' is not used [-Wunused-private-field] short int minute; ^ ./spatTime.h:44:12: warning: private field 'second' is not used [-Wunused-private-field] short int second; ^ 6 warnings generated. clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o terra.so RcppExports.o RcppFunctions.o RcppModule.o arith.o crs.o distRaster.o distance.o extract.o file_utils.o focal.o gcp.o gdal_algs.o gdal_multidimensional.o gdalio.o geodesic.o geos_methods.o geosphere.o math_utils.o mediancut.o memory.o movingWindow.o ncdf.o ram.o raster_methods.o raster_stats.o rasterize.o read.o read_gdal.o read_ogr.o sample.o sort.o spatBase.o spatDataframe.o spatFactor.o spatRaster.o spatRasterMultiple.o spatSources.o spatTime.o spatVector.o spatVector2.o string_utils.o vecmath.o vecmathse.o vector_methods.o write.o write_gdal.o write_ogr.o -lproj -L/usr/lib/x86_64-linux-gnu -lgdal -L/usr/lib/x86_64-linux-gnu -lgeos_c -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/00LOCK-terra/00new/terra/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘sds’ with signature ‘x="stars"’: no definition for class “stars” in method for ‘sds’ with signature ‘x="stars_proxy"’: no definition for class “stars_proxy” in method for ‘svc’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘coerce’ with signature ‘"stars","SpatRasterDataset"’: no definition for class “stars” in method for ‘coerce’ with signature ‘"ggmap","SpatRaster"’: no definition for class “ggmap” in method for ‘coerce’ with signature ‘"sf","SpatRaster"’: no definition for class “sf” in method for ‘coerce’ with signature ‘"sf","SpatVector"’: no definition for class “sf” in method for ‘coerce’ with signature ‘"sfc","SpatVector"’: no definition for class “sfc” in method for ‘coerce’ with signature ‘"sfg","SpatVector"’: no definition for class “sfg” in method for ‘coerce’ with signature ‘"XY","SpatVector"’: no definition for class “XY” in method for ‘coerce’ with signature ‘"im","SpatRaster"’: no definition for class “im” in method for ‘coerce’ with signature ‘"SpatVector","Spatial"’: no definition for class “Spatial” in method for ‘coerce’ with signature ‘"Spatial","SpatVector"’: no definition for class “Spatial” in method for ‘coerce’ with signature ‘"SpatialGrid","SpatRaster"’: no definition for class “SpatialGrid” in method for ‘coerce’ with signature ‘"SpatialPixels","SpatRaster"’: no definition for class “SpatialPixels” in method for ‘crs’ with signature ‘"sf"’: no definition for class “sf” Creating a generic function for ‘ncol’ from package ‘base’ in package ‘terra’ in method for ‘distance’ with signature ‘x="SpatRaster",y="sf"’: no definition for class “sf” in method for ‘ext’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘ext’ with signature ‘x="bbox"’: no definition for class “bbox” in method for ‘ext’ with signature ‘x="Extent"’: no definition for class “Extent” in method for ‘ext’ with signature ‘x="Raster"’: no definition for class “Raster” in method for ‘ext’ with signature ‘x="Spatial"’: no definition for class “Spatial” in method for ‘extract’ with signature ‘x="SpatRaster",y="sf"’: no definition for class “sf” in method for ‘mask’ with signature ‘x="SpatRaster",mask="sf"’: no definition for class “sf” in method for ‘points’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘lines’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘polys’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘lines’ with signature ‘x="leaflet"’: no definition for class “leaflet” in method for ‘points’ with signature ‘x="leaflet"’: no definition for class “leaflet” in method for ‘rast’ with signature ‘x="stars"’: no definition for class “stars” in method for ‘rast’ with signature ‘x="stars_proxy"’: no definition for class “stars_proxy” in method for ‘rasterize’ with signature ‘x="sf",y="SpatRaster"’: no definition for class “sf” in method for ‘show’ with signature ‘"Rcpp_SpatDataFrame"’: no definition for class “Rcpp_SpatDataFrame” in method for ‘show’ with signature ‘"Rcpp_SpatCategories"’: no definition for class “Rcpp_SpatCategories” in method for ‘geomtype’ with signature ‘x="Spatial"’: no definition for class “Spatial” in method for ‘vect’ with signature ‘x="Spatial"’: no definition for class “Spatial” in method for ‘vect’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘vect’ with signature ‘x="sfc"’: no definition for class “sfc” in method for ‘vect’ with signature ‘x="XY"’: no definition for class “XY” Creating a generic function for ‘unserialize’ from package ‘base’ in package ‘terra’ Creating a generic function for ‘readRDS’ from package ‘base’ in package ‘terra’ ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (terra) * installing *source* package ‘rex’ ... ** package ‘rex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rex) * installing *source* package ‘leaflet.providers’ ... ** package ‘leaflet.providers’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leaflet.providers) * installing *source* package ‘png’ ... ** package ‘png’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (16)’ clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O3 -Wall -pedantic -c dummy.c -o dummy.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O3 -Wall -pedantic -c read.c -o read.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O3 -Wall -pedantic -c write.c -o write.o clang-16 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o png.so dummy.o read.o write.o -lpng16 -lm -lz -lm -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/00LOCK-png/00new/png/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (png) * installing *source* package ‘reactR’ ... ** package ‘reactR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactR) * installing *source* package ‘sparkline’ ... ** package ‘sparkline’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparkline) * installing *source* package ‘tippy’ ... ** package ‘tippy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tippy) * installing *source* package ‘V8’ ... ** package ‘V8’ successfully unpacked and MD5 sums checked ** using staged installation Found C++17 compiler: clang++-16 Using CXXCPP=clang++-16 -std=gnu++17 -E Using PKG_CFLAGS=-I/usr/include/v8 -I/usr/include/v8-3.14 Using PKG_LIBS=-lv8 -lv8_libplatform Running feature test for pointer compression... Pointer compression not needed ** libs using C++ compiler: ‘Debian clang version 16.0.6 (16)’ using C++17 rm -f V8.so RcppExports.o bindings.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/v8 -I/usr/include/v8-3.14 -DV8_ENABLE_CHECKS -DISNODEJS=10.2.154.23-node.21 -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/include/v8 -I/usr/include/v8-3.14 -DV8_ENABLE_CHECKS -DISNODEJS=10.2.154.23-node.21 -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c bindings.cpp -o bindings.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o V8.so RcppExports.o bindings.o -lv8 -lv8_libplatform -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/00LOCK-V8/00new/V8/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (V8) * installing *source* package ‘raster’ ... ** package ‘raster’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (16)’ using C++ compiler: ‘Debian clang version 16.0.6 (16)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RasterModule.cpp -o RasterModule.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c aggregate.cpp -o aggregate.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bilinear.cpp -o bilinear.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c broom.cpp -o broom.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cellRowCol.cpp -o cellRowCol.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c clamp.cpp -o clamp.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distance.cpp -o distance.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c edge.cpp -o edge.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c focal_fun.cpp -o focal_fun.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c focal_get.cpp -o focal_get.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c focal_sum.cpp -o focal_sum.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c geodesic.c -o geodesic.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c getPolygons.cpp -o getPolygons.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c layerize.cpp -o layerize.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c memory.cpp -o memory.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c modal.cpp -o modal.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ppmin.cpp -o ppmin.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raster_aggregate.cpp -o raster_aggregate.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raster_distance.cpp -o raster_distance.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rasterize.cpp -o rasterize.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reclass.cpp -o reclass.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c terrain.cpp -o terrain.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c util.cpp -o util.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c xyCell.cpp -o xyCell.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o raster.so RasterModule.o RcppExports.o aggregate.o bilinear.o broom.o cellRowCol.o clamp.o distance.o edge.o focal_fun.o focal_get.o focal_sum.o geodesic.o getPolygons.o layerize.o memory.o modal.o ppmin.o raster_aggregate.o raster_distance.o rasterize.o reclass.o terrain.o util.o xyCell.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/00LOCK-raster/00new/raster/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘initialize’ with signature ‘"BasicRaster"’: no definition for class “BasicRaster” in method for ‘brick’ with signature ‘x="kasc"’: no definition for class “kasc” in method for ‘brick’ with signature ‘x="grf"’: no definition for class “grf” in method for ‘coerce’ with signature ‘"STFDF","RasterBrick"’: no definition for class “STFDF” in method for ‘coerce’ with signature ‘"STSDF","RasterBrick"’: no definition for class “STSDF” in method for ‘coerce’ with signature ‘"asc","RasterLayer"’: no definition for class “asc” in method for ‘coerce’ with signature ‘"RasterLayer","asc"’: no definition for class “asc” in method for ‘coerce’ with signature ‘"kasc","RasterBrick"’: no definition for class “kasc” in method for ‘coerce’ with signature ‘"kasc","RasterStack"’: no definition for class “kasc” in method for ‘coerce’ with signature ‘"kde","RasterLayer"’: no definition for class “kde” in method for ‘coerce’ with signature ‘"grf","RasterBrick"’: no definition for class “grf” in method for ‘coerce’ with signature ‘"grf","RasterLayer"’: no definition for class “grf” in method for ‘extent’ with signature ‘x="bbox"’: no definition for class “bbox” in method for ‘extent’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘extract’ with signature ‘x="Raster",y="sf"’: no definition for class “sf” in method for ‘mask’ with signature ‘x="Raster",mask="sf"’: no definition for class “sf” in method for ‘raster’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘raster’ with signature ‘x="kasc"’: no definition for class “kasc” in method for ‘raster’ with signature ‘x="asc"’: no definition for class “asc” in method for ‘raster’ with signature ‘x="kde"’: no definition for class “kde” in method for ‘raster’ with signature ‘x="grf"’: no definition for class “grf” in method for ‘rasterize’ with signature ‘x="sf",y="Raster"’: no definition for class “sf” Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘raster’ Creating a generic function for ‘colSums’ from package ‘base’ in package ‘raster’ in method for ‘setValues’ with signature ‘x="RasterLayerSparse"’: no definition for class “RasterLayerSparse” in method for ‘stack’ with signature ‘x="kasc"’: no definition for class “kasc” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (raster) * installing *source* package ‘covr’ ... ** package ‘covr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (16)’ clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reassign.c -o reassign.o clang-16 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o covr.so reassign.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/RtmpUC6qSA/RLIBS_2924c959b6ce36/00LOCK-covr/00new/covr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (covr) * installing *source* package ‘reactable’ ... ** package ‘reactable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactable) * installing *source* package ‘leaflet’ ... ** package ‘leaflet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leaflet) --- finished re-building ‘Predicting_Cells_with_Layers_using_predictLayerHVT.Rmd’ SUMMARY: processing the following file failed: ‘HVT_model_diagnostics_vignette.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE