downloading reverse dependencies ... downloading emdi_2.2.2.tar.gz ... ok downloading lmeresampler_0.2.4.tar.gz ... ok downloading povmap_1.0.1.tar.gz ... ok downloading saeTrafo_1.0.4.tar.gz ... ok installing dependencies ‘bestNormalize’, ‘emdi’, ‘HLMdiag’, ‘nlmeU’, ‘saeRobust’, ‘simFrame’, ‘WWGbook’ also installing the dependencies ‘aoos’, ‘modules’ begin installing package ‘aoos’ begin installing package ‘modules’ begin installing package ‘WWGbook’ begin installing package ‘HLMdiag’ begin installing package ‘simFrame’ begin installing package ‘nlmeU’ begin installing package ‘bestNormalize’ * installing *source* package ‘WWGbook’ ... ** this is package ‘WWGbook’ version ‘1.0.2’ ** package ‘WWGbook’ successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WWGbook) * installing *source* package ‘modules’ ... ** this is package ‘modules’ version ‘0.13.0’ ** package ‘modules’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (modules) * installing *source* package ‘nlmeU’ ... ** this is package ‘nlmeU’ version ‘0.70-9’ ** package ‘nlmeU’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlmeU) * installing *source* package ‘aoos’ ... ** this is package ‘aoos’ version ‘0.5.0’ ** package ‘aoos’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aoos) begin installing package ‘saeRobust’ * installing *source* package ‘bestNormalize’ ... ** this is package ‘bestNormalize’ version ‘1.9.1’ ** package ‘bestNormalize’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bestNormalize) * installing *source* package ‘simFrame’ ... ** this is package ‘simFrame’ version ‘0.5.4’ ** package ‘simFrame’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPUFVhf/R.INSTALL833ac5c0d2201/simFrame/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c simFrame.cpp -o simFrame.o In file included from /home/hornik/tmp/R/include/R.h:73, from simFrame.cpp:8: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions/cpp11/exceptions.h: In function ‘void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]’: /home/hornik/tmp/R/include/R_ext/Error.h:85:17: warning: infinite recursion detected [-Winfinite-recursion] 85 | #define warning Rf_warning | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions/cpp11/exceptions.h:46:13: note: in expansion of macro ‘warning’ 46 | inline void warning(const char* fmt, Args&&... args ) { | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:180, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:130, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from simFrame.h:9, from simFrame.cpp:9: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions/cpp11/exceptions.h:47:15: note: recursive call 47 | Rf_warning("%s", tfm::format(fmt, std::forward(args)... ).c_str()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simFrame_init.c -o simFrame_init.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o simFrame.so simFrame.o simFrame_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPUFVhf/R.INSTALL833ac5c0d2201/simFrame/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-simFrame/00new/simFrame/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simFrame) * installing *source* package ‘saeRobust’ ... ** this is package ‘saeRobust’ version ‘0.5.0’ ** package ‘saeRobust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5hUdY3/R.INSTALL834894205d919/saeRobust/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c matixDefinitions.cpp -o matixDefinitions.o matixDefinitions.cpp: In function ‘Rcpp::List matVInvT(arma::mat, double, double, double, arma::mat, arma::colvec)’: matixDefinitions.cpp:51:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 51 | for(int r = 0; r < Ome1.n_rows; ++r) { | ~~^~~~~~~~~~~~~ matixDefinitions.cpp: In function ‘arma::mat matVDerR2(double, double, arma::mat, int)’: matixDefinitions.cpp:87:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | for(int i = 1; i < Ome2.n_cols; ++i) { | ~~^~~~~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o saeRobust.so RcppExports.o matixDefinitions.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5hUdY3/R.INSTALL834894205d919/saeRobust/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-saeRobust/00new/saeRobust/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (saeRobust) * installing *source* package ‘HLMdiag’ ... ** this is package ‘HLMdiag’ version ‘0.5.1’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpe1vNuC/R.INSTALL833ae61883fa5/HLMdiag/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HLMdiag_init.c -o HLMdiag_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c cooksd_obs.cpp -o cooksd_obs.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c cooksd_subset.cpp -o cooksd_subset.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c covratio.cpp -o covratio.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c covtrace.cpp -o covtrace.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c linear_algebra_fnc.cpp -o linear_algebra_fnc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c mdffits_subset.cpp -o mdffits_subset.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o HLMdiag.so HLMdiag_init.o cooksd_obs.o cooksd_subset.o covratio.o covtrace.o linear_algebra_fnc.o mdffits_subset.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpe1vNuC/R.INSTALL833ae61883fa5/HLMdiag/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-HLMdiag/00new/HLMdiag/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HLMdiag) begin installing package ‘emdi’ * installing *source* package ‘emdi’ ... ** this is package ‘emdi’ version ‘2.2.2’ ** package ‘emdi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emdi) checking HLMdiag_0.5.1.tar.gz ... checking lmeresampler_0.2.4.tar.gz ... checking emdi_2.2.2.tar.gz ... checking povmap_1.0.1.tar.gz ... checking saeTrafo_1.0.4.tar.gz ... Depends: Package: HLMdiag Depends: R (>= 3.5.0) Imports: ggplot2 (>= 0.9.2), stats, methods, plyr, reshape2, MASS, Matrix, mgcv, dplyr, magrittr, stringr, purrr, tibble, tidyselect, janitor, Rcpp, rlang, ggrepel, diagonals LinkingTo: Rcpp, RcppArmadillo Timings: user system elapsed HLMdiag 153.652 10.459 165.6 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 4 0 Check results summary: HLMdiag ... OK rdepends_emdi ... NOTE * checking Rd cross-references ... NOTE rdepends_lmeresampler ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_povmap ... NOTE * checking Rd cross-references ... NOTE rdepends_saeTrafo ... NOTE * checking Rd cross-references ... NOTE Check results changes: Package: saeTrafo Check: CRAN incoming feasibility Old result: NOTE