* using log directory ‘/srv/hornik/tmp/CRAN_pretest/HEssRNA.Rcheck’
* using R Under development (unstable) (2024-11-11 r87319)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘HEssRNA/DESCRIPTION’ ... OK
* this is package ‘HEssRNA’ version ‘1.0.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Sarika Jaiswal <sarika@icar.gov.in>’

New submission

Possibly misspelled words in DESCRIPTION:
  HEssRNA (2:8)
  Heritability (2:31)
  heritability (13:78, 14:77, 15:35, 15:70, 15:88)

The Title field starts with the package name.
The Title field should be in title case. Current version is:
  ‘HEssRNA: R package for Heritability-based Estimation of Sample Size for RNA-Seq data’
In title case that is:
  ‘HEssRNA: R Package for Heritability-Based Estimation of Sample Size for RNA-Seq Data’

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘HEssRNA’ can be installed ... [15s/15s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [5s/5s] OK
* checking whether the package can be loaded with stated dependencies ... [5s/5s] OK
* checking whether the package can be unloaded cleanly ... [5s/5s] OK
* checking whether the namespace can be loaded with stated dependencies ... [5s/5s] OK
* checking whether the namespace can be unloaded cleanly ... [5s/5s] OK
* checking loading without being on the library search path ... [5s/5s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [21s/21s] NOTE
hIndxMeanCalc4Traits: no visible binding for global variable
  ‘Trait.name’
hIndxMeanCalc4Traits: no visible binding for global variable
  ‘Heritability’
powerCalc: no visible global function definition for ‘na.omit’
prcesDF4modelInhouse: no visible global function definition for
  ‘starts_with’
prcesDF4modelInhouse: no visible binding for global variable
  ‘NoOfReplicates’
smplSizPred: no visible binding for global variable ‘df4modelInpt’
smplSizPred: no visible binding for global variable ‘hIndexMeanDF’
smplSizPred: no visible global function definition for ‘lm’
smplSizPred: no visible global function definition for ‘predict’
smplSizPredModel: no visible binding for global variable ‘df4modelInpt’
smplSizPredModel: no visible global function definition for ‘lm’
Undefined global functions or variables:
  Heritability NoOfReplicates Trait.name df4modelInpt hIndexMeanDF lm
  na.omit predict starts_with
Consider adding
  importFrom("stats", "lm", "na.omit", "predict")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'powerCalc.Rd':
  \examples lines wider than 100 characters:
     # This example is just to showcase the structure of input data. The number of records may need to be larger to execute the function

Rd file 'smplSizPred.Rd':
  \examples lines wider than 100 characters:
     #                                   heritabilityClass = "mid", inptPwr = 0.85, fc = 2.5, trait = "Trait1", tissue = "Liver")

Rd file 'smplSizPredModel.Rd':
  \examples lines wider than 100 characters:
     # model <- smplSizPredModel(df4model = df4modelInpt, heritabilityClass = "High", inptPwr = 0.8, fc = 2, tissue = "Liver")

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [7s/7s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [5s/5s] OK
  Running ‘testthat.R’ [5s/5s]
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs