* installing *source* package ‘HDclust’ ... ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether clang++-18 -std=gnu++17 accepts -g... yes checking how to run the C++ preprocessor... clang++-18 -std=gnu++17 -E checking for clang++-18 -std=gnu++17 option to support OpenMP... -fopenmp configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘Debian clang version 18.1.8 (11)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c cluster.cpp -o cluster.o cluster.cpp:31:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 31 | #define R_NO_REMAP // Prevent R from remapping common names | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c estimate.cpp -o estimate.o In file included from estimate.cpp:27: ./hmm.h:33:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 33 | #define R_NO_REMAP // Prevent R from remapping common names | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c matrix.cpp -o matrix.o matrix.cpp:33:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 33 | #define R_NO_REMAP // Prevent R from remapping common names | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c modal.cpp -o modal.o In file included from modal.cpp:27: ./hmm.h:33:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 33 | #define R_NO_REMAP // Prevent R from remapping common names | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c prob.cpp -o prob.o In file included from prob.cpp:29: ./hmm.h:33:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 33 | #define R_NO_REMAP // Prevent R from remapping common names | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_findModes.cpp -o rcpp_findModes.o In file included from rcpp_findModes.cpp:28: In file included from ./utils_rcpp.h:2: ./hmm.h:33:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 33 | #define R_NO_REMAP // Prevent R from remapping common names | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_testsync.cpp -o rcpp_testsync.o In file included from rcpp_testsync.cpp:27: In file included from ./utils_rcpp.h:2: ./hmm.h:33:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 33 | #define R_NO_REMAP // Prevent R from remapping common names | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_trainmaster.cpp -o rcpp_trainmaster.o In file included from rcpp_trainmaster.cpp:7: ./hmm.h:33:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 33 | #define R_NO_REMAP // Prevent R from remapping common names | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c utils_rcpp.cpp -o utils_rcpp.o In file included from utils_rcpp.cpp:1: In file included from ./utils_rcpp.h:2: ./hmm.h:33:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 33 | #define R_NO_REMAP // Prevent R from remapping common names | ^ :5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ utils_rcpp.cpp:64:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 64 | md->maxnumst = maxnumst; | ^ utils_rcpp.cpp:61:3: note: previous statement is here 61 | for (int i = 0; i < md->nb; i++) | ^ 2 warnings generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o HDclust.so RcppExports.o cluster.o estimate.o matrix.o modal.o prob.o rcpp_findModes.o rcpp_testsync.o rcpp_trainmaster.o utils_rcpp.o -llapack -L/home/hornik/tmp/R-d-clang-18/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -fopenmp -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/HDclust.Rcheck/00LOCK-HDclust/00new/HDclust/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HDclust)