* using log directory 'd:/RCompile/CRANincoming/R-devel/GroupComparison.Rcheck'
* using R Under development (unstable) (2024-09-04 r87094 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'GroupComparison/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GroupComparison' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Timur Rizvanov <tirizvanov@gmail.com>'

New submission

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Your",
                      family = "Name",
                      role = "aut"),
               person(given = "Timur",
                      family = "Rizvanov",
                      role = "cre",
                      email = "tirizvanov@gmail.com"))
as necessary.

DESCRIPTION fields with placeholder content:
  Title: what the package does (title case)
  Description: more about what it does (maybe more than one line).
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'GroupComparison' can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import 'dplyr::combine' by 'gridExtra::combine' when loading 'GroupComparison'
See 'd:/RCompile/CRANincoming/R-devel/GroupComparison.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
create_violin_plot : calc_ci: no visible global function definition for
  'quantile'
create_violin_plot: no visible binding for global variable
  'group_label'
create_violin_plot: no visible binding for global variable 'delta'
create_violin_plot: no visible binding for global variable 'lower_ci'
create_violin_plot: no visible binding for global variable 'upper_ci'
create_violin_plot: no visible global function definition for 'combn'
create_violin_plot : <anonymous>: no visible binding for global
  variable 'group_label'
create_violin_plot : <anonymous>: no visible global function definition
  for 'wilcox.test'
create_violin_plot: no visible binding for global variable '.'
split_violin_plot: no visible binding for global variable 'group'
split_violin_plot: no visible binding for global variable 'value'
split_violin_plot: no visible global function definition for 'quantile'
split_violin_plot: no visible binding for global variable 'lower_ci'
split_violin_plot: no visible binding for global variable 'upper_ci'
split_violin_plot: no visible binding for global variable 'Q1'
split_violin_plot: no visible binding for global variable 'Q3'
split_violin_plot: no visible global function definition for 'setNames'
violin_plots_with_comparison_group : <anonymous>: no visible binding
  for global variable 'group_label'
violin_plots_with_comparison_group : <anonymous>: no visible global
  function definition for 'wilcox.test'
violin_plots_with_comparison_group: no visible binding for global
  variable '.'
violin_plots_with_comparison_group : calc_ci: no visible global
  function definition for 'quantile'
violin_plots_with_comparison_group: no visible binding for global
  variable 'group_label'
violin_plots_with_comparison_group: no visible binding for global
  variable 'delta'
violin_plots_with_comparison_group: no visible binding for global
  variable 'lower_ci'
violin_plots_with_comparison_group: no visible binding for global
  variable 'upper_ci'
Undefined global functions or variables:
  . Q1 Q3 combn delta group group_label lower_ci quantile setNames
  upper_ci value wilcox.test
Consider adding
  importFrom("stats", "quantile", "setNames", "wilcox.test")
  importFrom("utils", "combn")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'create_violin_plot.Rd':
  \examples lines wider than 100 characters:
     p <- create_violin_plot(data, "group", "value", group_colors = group_colors, y_lab = bquote(bold(Delta ~ Log(activity))))

Rd file 'split_violin_plot.Rd':
  \examples lines wider than 100 characters:
                            x_lab = "Groups", y_lab = bquote(bold(Delta ~ Log(activity))), outliers = TRUE, CI = TRUE, median = TRUE, n_obs  ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'GroupComparison-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: split_violin_plot
> ### Title: Create a Split Violin Plot with Custom Elements and Options
> ### Aliases: split_violin_plot
> 
> ### ** Examples
> 
> # Example data
> data <- data.frame(
+   group = rep(c("A", "B", "C"), each = 100),
+   value = c(rnorm(100, mean = 0), rnorm(100, mean = 1), rnorm(100, mean = 2)),
+   split_criteria = sample(c(TRUE, FALSE), 300, replace = TRUE)
+ )
> 
> colors <- c("TRUE" = "#FF9999", "FALSE" = "#99CCFF")
> labels <- c("TRUE" = "first group", "FALSE" = "second group")
> 
> # Generate the split violin plot with custom labels
> p <- split_violin_plot(data, "group", "value", "split_criteria", colors, labels = labels,
+                        x_lab = "Groups", y_lab = bquote(bold(Delta ~ Log(activity))), outliers = TRUE, CI = TRUE, median = TRUE, n_obs = TRUE)
Error in `geom_split_violin()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 1st layer.
Caused by error in `loadNamespace()`:
! there is no package called 'plyr'
Backtrace:
     ▆
  1. ├─GroupComparison::split_violin_plot(...)
  2. │ └─gridExtra::grid.arrange(p, legend, ncol = 2, widths = c(3, 1))
  3. │   └─gridExtra::arrangeGrob(...)
  4. │     └─base::lapply(grobs[toconv], ggplot2::ggplotGrob)
  5. │       └─ggplot2 (local) FUN(X[[i]], ...)
  6. │         ├─ggplot2::ggplot_gtable(ggplot_build(x))
  7. │         └─ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
  8. │           └─ggplot2:::by_layer(...)
  9. │             ├─rlang::try_fetch(...)
 10. │             │ ├─base::tryCatch(...)
 11. │             │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 12. │             │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 13. │             │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 14. │             │ └─base::withCallingHandlers(...)
 15. │             └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 16. │               └─l$draw_geom(d, layout)
 17. │                 └─ggplot2 (local) draw_geom(..., self = self)
 18. │                   └─self$geom$draw_layer(...)
 19. │                     └─ggplot2 (local) draw_layer(..., self = self)
 20. │                       └─base::lapply(...)
 21. │                         └─ggplot2 (local) FUN(X[[i]], ...)
 22. │                           ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
 23. │                           └─self$draw_panel(data, panel_params, coord, draw_quantiles = NULL)
 24. │                             └─ggplot2 (local) draw_panel(..., self = self)
 25. │                               └─base::lapply(...)
 26. │                                 └─ggplot2 (local) FUN(X[[i]], ...)
 27. │                                   └─self$draw_group(group, panel_params, coord, ...)
 28. │                                     └─GroupComparison (local) draw_group(..., self = self)
 29. ├─base::loadNamespace(x)
 30. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 31. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
 32. │ │   └─base (local) doWithOneRestart(return(expr), restart)
 33. │ └─base::stop(cond)
 34. └─rlang (local) `<fn>`(`<pckgNtFE>`)
 35.   └─handlers[[1L]](cnd)
 36.     └─cli::cli_abort(...)
 37.       └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [15s] ERROR
  Running 'testthat.R' [15s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(GroupComparison)
  Warning message:
  replacing previous import 'dplyr::combine' by 'gridExtra::combine' when loading 'GroupComparison' 
  > 
  > test_check("GroupComparison")
  [ FAIL 8 | WARN 2 | SKIP 0 | PASS 17 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-split_violin_plot.R:17:3'): split_violin_plot works with valid input ──
  Error in `geom_split_violin(trim = FALSE, size = 0.5, show.legend = FALSE, 
      adjust = 2.2)`: Problem while converting geom to grob.
  ℹ Error occurred in the 1st layer.
  Caused by error in `loadNamespace()`:
  ! there is no package called 'plyr'
  Backtrace:
       ▆
    1. ├─GroupComparison::split_violin_plot(...) at test-split_violin_plot.R:17:3
    2. │ └─gridExtra::grid.arrange(p, legend, ncol = 2, widths = c(3, 1))
    3. │   └─gridExtra::arrangeGrob(...)
    4. │     └─base::lapply(grobs[toconv], ggplot2::ggplotGrob)
    5. │       └─ggplot2 (local) FUN(X[[i]], ...)
    6. │         ├─ggplot2::ggplot_gtable(ggplot_build(x))
    7. │         └─ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
    8. │           └─ggplot2:::by_layer(...)
    9. │             ├─rlang::try_fetch(...)
   10. │             │ ├─base::tryCatch(...)
   11. │             │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   12. │             │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   13. │             │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   14. │             │ └─base::withCallingHandlers(...)
   15. │             └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
   16. │               └─l$draw_geom(d, layout)
   17. │                 └─ggplot2 (local) draw_geom(..., self = self)
   18. │                   └─self$geom$draw_layer(...)
   19. │                     └─ggplot2 (local) draw_layer(..., self = self)
   20. │                       └─base::lapply(...)
   21. │                         └─ggplot2 (local) FUN(X[[i]], ...)
   22. │                           ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
   23. │                           └─self$draw_panel(data, panel_params, coord, draw_quantiles = NULL)
   24. │                             └─ggplot2 (local) draw_panel(..., self = self)
   25. │                               └─base::lapply(...)
   26. │                                 └─ggplot2 (local) FUN(X[[i]], ...)
   27. │                                   └─self$draw_group(group, panel_params, coord, ...)
   28. │                                     └─GroupComparison (local) draw_group(..., self = self)
   29. ├─base::loadNamespace(x)
   30. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   31. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   32. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   33. │ └─base::stop(cond)
   34. └─rlang (local) `<fn>`(`<pckgNtFE>`)
   35.   └─handlers[[1L]](cnd)
   36.     └─cli::cli_abort(...)
   37.       └─rlang::abort(...)
  ── Error ('test-split_violin_plot.R:31:3'): axis labels are customizable ───────
  Error in `geom_split_violin(trim = FALSE, size = 0.5, show.legend = FALSE, 
      adjust = 2.2)`: Problem while converting geom to grob.
  ℹ Error occurred in the 1st layer.
  Caused by error in `loadNamespace()`:
  ! there is no package called 'plyr'
  Backtrace:
       ▆
    1. ├─GroupComparison::split_violin_plot(...) at test-split_violin_plot.R:31:3
    2. │ └─gridExtra::grid.arrange(p, legend, ncol = 2, widths = c(3, 1))
    3. │   └─gridExtra::arrangeGrob(...)
    4. │     └─base::lapply(grobs[toconv], ggplot2::ggplotGrob)
    5. │       └─ggplot2 (local) FUN(X[[i]], ...)
    6. │         ├─ggplot2::ggplot_gtable(ggplot_build(x))
    7. │         └─ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
    8. │           └─ggplot2:::by_layer(...)
    9. │             ├─rlang::try_fetch(...)
   10. │             │ ├─base::tryCatch(...)
   11. │             │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   12. │             │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   13. │             │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   14. │             │ └─base::withCallingHandlers(...)
   15. │             └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
   16. │               └─l$draw_geom(d, layout)
   17. │                 └─ggplot2 (local) draw_geom(..., self = self)
   18. │                   └─self$geom$draw_layer(...)
   19. │                     └─ggplot2 (local) draw_layer(..., self = self)
   20. │                       └─base::lapply(...)
   21. │                         └─ggplot2 (local) FUN(X[[i]], ...)
   22. │                           ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
   23. │                           └─self$draw_panel(data, panel_params, coord, draw_quantiles = NULL)
   24. │                             └─ggplot2 (local) draw_panel(..., self = self)
   25. │                               └─base::lapply(...)
   26. │                                 └─ggplot2 (local) FUN(X[[i]], ...)
   27. │                                   └─self$draw_group(group, panel_params, coord, ...)
   28. │                                     └─GroupComparison (local) draw_group(..., self = self)
   29. ├─base::loadNamespace(x)
   30. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   31. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   32. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   33. │ └─base::stop(cond)
   34. └─rlang (local) `<fn>`(`<pckgNtFE>`)
   35.   └─handlers[[1L]](cnd)
   36.     └─cli::cli_abort(...)
   37.       └─rlang::abort(...)
  ── Error ('test-split_violin_plot.R:46:3'): y-axis breaks and limits can be customized ──
  Error in `geom_split_violin(trim = FALSE, size = 0.5, show.legend = FALSE, 
      adjust = 2.2)`: Problem while converting geom to grob.
  ℹ Error occurred in the 1st layer.
  Caused by error in `loadNamespace()`:
  ! there is no package called 'plyr'
  Backtrace:
       ▆
    1. ├─GroupComparison::split_violin_plot(...) at test-split_violin_plot.R:46:3
    2. │ └─gridExtra::grid.arrange(p, legend, ncol = 2, widths = c(3, 1))
    3. │   └─gridExtra::arrangeGrob(...)
    4. │     └─base::lapply(grobs[toconv], ggplot2::ggplotGrob)
    5. │       └─ggplot2 (local) FUN(X[[i]], ...)
    6. │         ├─ggplot2::ggplot_gtable(ggplot_build(x))
    7. │         └─ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
    8. │           └─ggplot2:::by_layer(...)
    9. │             ├─rlang::try_fetch(...)
   10. │             │ ├─base::tryCatch(...)
   11. │             │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   12. │             │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   13. │             │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   14. │             │ └─base::withCallingHandlers(...)
   15. │             └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
   16. │               └─l$draw_geom(d, layout)
   17. │                 └─ggplot2 (local) draw_geom(..., self = self)
   18. │                   └─self$geom$draw_layer(...)
   19. │                     └─ggplot2 (local) draw_layer(..., self = self)
   20. │                       └─base::lapply(...)
   21. │                         └─ggplot2 (local) FUN(X[[i]], ...)
   22. │                           ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
   23. │                           └─self$draw_panel(data, panel_params, coord, draw_quantiles = NULL)
   24. │                             └─ggplot2 (local) draw_panel(..., self = self)
   25. │                               └─base::lapply(...)
   26. │                                 └─ggplot2 (local) FUN(X[[i]], ...)
   27. │                                   └─self$draw_group(group, panel_params, coord, ...)
   28. │                                     └─GroupComparison (local) draw_group(..., self = self)
   29. ├─base::loadNamespace(x)
   30. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   31. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   32. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   33. │ └─base::stop(cond)
   34. └─rlang (local) `<fn>`(`<pckgNtFE>`)
   35.   └─handlers[[1L]](cnd)
   36.     └─cli::cli_abort(...)
   37.       └─rlang::abort(...)
  ── Error ('test-split_violin_plot.R:61:3'): outliers can be included or excluded ──
  Error in `geom_split_violin(trim = FALSE, size = 0.5, show.legend = FALSE, 
      adjust = 2.2)`: Problem while converting geom to grob.
  ℹ Error occurred in the 1st layer.
  Caused by error in `loadNamespace()`:
  ! there is no package called 'plyr'
  Backtrace:
       ▆
    1. ├─GroupComparison::split_violin_plot(...) at test-split_violin_plot.R:61:3
    2. │ └─gridExtra::grid.arrange(p, legend, ncol = 2, widths = c(3, 1))
    3. │   └─gridExtra::arrangeGrob(...)
    4. │     └─base::lapply(grobs[toconv], ggplot2::ggplotGrob)
    5. │       └─ggplot2 (local) FUN(X[[i]], ...)
    6. │         ├─ggplot2::ggplot_gtable(ggplot_build(x))
    7. │         └─ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
    8. │           └─ggplot2:::by_layer(...)
    9. │             ├─rlang::try_fetch(...)
   10. │             │ ├─base::tryCatch(...)
   11. │             │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   12. │             │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   13. │             │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   14. │             │ └─base::withCallingHandlers(...)
   15. │             └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
   16. │               └─l$draw_geom(d, layout)
   17. │                 └─ggplot2 (local) draw_geom(..., self = self)
   18. │                   └─self$geom$draw_layer(...)
   19. │                     └─ggplot2 (local) draw_layer(..., self = self)
   20. │                       └─base::lapply(...)
   21. │                         └─ggplot2 (local) FUN(X[[i]], ...)
   22. │                           ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
   23. │                           └─self$draw_panel(data, panel_params, coord, draw_quantiles = NULL)
   24. │                             └─ggplot2 (local) draw_panel(..., self = self)
   25. │                               └─base::lapply(...)
   26. │                                 └─ggplot2 (local) FUN(X[[i]], ...)
   27. │                                   └─self$draw_group(group, panel_params, coord, ...)
   28. │                                     └─GroupComparison (local) draw_group(..., self = self)
   29. ├─base::loadNamespace(x)
   30. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   31. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   32. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   33. │ └─base::stop(cond)
   34. └─rlang (local) `<fn>`(`<pckgNtFE>`)
   35.   └─handlers[[1L]](cnd)
   36.     └─cli::cli_abort(...)
   37.       └─rlang::abort(...)
  ── Error ('test-split_violin_plot.R:75:3'): confidence intervals (CI) can be toggled ──
  Error in `geom_split_violin(trim = FALSE, size = 0.5, show.legend = FALSE, 
      adjust = 2.2)`: Problem while converting geom to grob.
  ℹ Error occurred in the 1st layer.
  Caused by error in `loadNamespace()`:
  ! there is no package called 'plyr'
  Backtrace:
       ▆
    1. ├─GroupComparison::split_violin_plot(...) at test-split_violin_plot.R:75:3
    2. │ └─gridExtra::grid.arrange(p, legend, ncol = 2, widths = c(3, 1))
    3. │   └─gridExtra::arrangeGrob(...)
    4. │     └─base::lapply(grobs[toconv], ggplot2::ggplotGrob)
    5. │       └─ggplot2 (local) FUN(X[[i]], ...)
    6. │         ├─ggplot2::ggplot_gtable(ggplot_build(x))
    7. │         └─ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
    8. │           └─ggplot2:::by_layer(...)
    9. │             ├─rlang::try_fetch(...)
   10. │             │ ├─base::tryCatch(...)
   11. │             │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   12. │             │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   13. │             │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   14. │             │ └─base::withCallingHandlers(...)
   15. │             └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
   16. │               └─l$draw_geom(d, layout)
   17. │                 └─ggplot2 (local) draw_geom(..., self = self)
   18. │                   └─self$geom$draw_layer(...)
   19. │                     └─ggplot2 (local) draw_layer(..., self = self)
   20. │                       └─base::lapply(...)
   21. │                         └─ggplot2 (local) FUN(X[[i]], ...)
   22. │                           ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
   23. │                           └─self$draw_panel(data, panel_params, coord, draw_quantiles = NULL)
   24. │                             └─ggplot2 (local) draw_panel(..., self = self)
   25. │                               └─base::lapply(...)
   26. │                                 └─ggplot2 (local) FUN(X[[i]], ...)
   27. │                                   └─self$draw_group(group, panel_params, coord, ...)
   28. │                                     └─GroupComparison (local) draw_group(..., self = self)
   29. ├─base::loadNamespace(x)
   30. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   31. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   32. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   33. │ └─base::stop(cond)
   34. └─rlang (local) `<fn>`(`<pckgNtFE>`)
   35.   └─handlers[[1L]](cnd)
   36.     └─cli::cli_abort(...)
   37.       └─rlang::abort(...)
  ── Error ('test-split_violin_plot.R:89:3'): medians can be included or excluded ──
  Error in `geom_split_violin(trim = FALSE, size = 0.5, show.legend = FALSE, 
      adjust = 2.2)`: Problem while converting geom to grob.
  ℹ Error occurred in the 1st layer.
  Caused by error in `loadNamespace()`:
  ! there is no package called 'plyr'
  Backtrace:
       ▆
    1. ├─GroupComparison::split_violin_plot(...) at test-split_violin_plot.R:89:3
    2. │ └─gridExtra::grid.arrange(p, legend, ncol = 2, widths = c(3, 1))
    3. │   └─gridExtra::arrangeGrob(...)
    4. │     └─base::lapply(grobs[toconv], ggplot2::ggplotGrob)
    5. │       └─ggplot2 (local) FUN(X[[i]], ...)
    6. │         ├─ggplot2::ggplot_gtable(ggplot_build(x))
    7. │         └─ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
    8. │           └─ggplot2:::by_layer(...)
    9. │             ├─rlang::try_fetch(...)
   10. │             │ ├─base::tryCatch(...)
   11. │             │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   12. │             │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   13. │             │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   14. │             │ └─base::withCallingHandlers(...)
   15. │             └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
   16. │               └─l$draw_geom(d, layout)
   17. │                 └─ggplot2 (local) draw_geom(..., self = self)
   18. │                   └─self$geom$draw_layer(...)
   19. │                     └─ggplot2 (local) draw_layer(..., self = self)
   20. │                       └─base::lapply(...)
   21. │                         └─ggplot2 (local) FUN(X[[i]], ...)
   22. │                           ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
   23. │                           └─self$draw_panel(data, panel_params, coord, draw_quantiles = NULL)
   24. │                             └─ggplot2 (local) draw_panel(..., self = self)
   25. │                               └─base::lapply(...)
   26. │                                 └─ggplot2 (local) FUN(X[[i]], ...)
   27. │                                   └─self$draw_group(group, panel_params, coord, ...)
   28. │                                     └─GroupComparison (local) draw_group(..., self = self)
   29. ├─base::loadNamespace(x)
   30. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   31. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   32. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   33. │ └─base::stop(cond)
   34. └─rlang (local) `<fn>`(`<pckgNtFE>`)
   35.   └─handlers[[1L]](cnd)
   36.     └─cli::cli_abort(...)
   37.       └─rlang::abort(...)
  ── Error ('test-split_violin_plot.R:103:3'): number of observations (n) can be toggled ──
  Error in `geom_split_violin(trim = FALSE, size = 0.5, show.legend = FALSE, 
      adjust = 2.2)`: Problem while converting geom to grob.
  ℹ Error occurred in the 1st layer.
  Caused by error in `loadNamespace()`:
  ! there is no package called 'plyr'
  Backtrace:
       ▆
    1. ├─GroupComparison::split_violin_plot(...) at test-split_violin_plot.R:103:3
    2. │ └─gridExtra::grid.arrange(p, legend, ncol = 2, widths = c(3, 1))
    3. │   └─gridExtra::arrangeGrob(...)
    4. │     └─base::lapply(grobs[toconv], ggplot2::ggplotGrob)
    5. │       └─ggplot2 (local) FUN(X[[i]], ...)
    6. │         ├─ggplot2::ggplot_gtable(ggplot_build(x))
    7. │         └─ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
    8. │           └─ggplot2:::by_layer(...)
    9. │             ├─rlang::try_fetch(...)
   10. │             │ ├─base::tryCatch(...)
   11. │             │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   12. │             │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   13. │             │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   14. │             │ └─base::withCallingHandlers(...)
   15. │             └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
   16. │               └─l$draw_geom(d, layout)
   17. │                 └─ggplot2 (local) draw_geom(..., self = self)
   18. │                   └─self$geom$draw_layer(...)
   19. │                     └─ggplot2 (local) draw_layer(..., self = self)
   20. │                       └─base::lapply(...)
   21. │                         └─ggplot2 (local) FUN(X[[i]], ...)
   22. │                           ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
   23. │                           └─self$draw_panel(data, panel_params, coord, draw_quantiles = NULL)
   24. │                             └─ggplot2 (local) draw_panel(..., self = self)
   25. │                               └─base::lapply(...)
   26. │                                 └─ggplot2 (local) FUN(X[[i]], ...)
   27. │                                   └─self$draw_group(group, panel_params, coord, ...)
   28. │                                     └─GroupComparison (local) draw_group(..., self = self)
   29. ├─base::loadNamespace(x)
   30. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   31. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   32. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   33. │ └─base::stop(cond)
   34. └─rlang (local) `<fn>`(`<pckgNtFE>`)
   35.   └─handlers[[1L]](cnd)
   36.     └─cli::cli_abort(...)
   37.       └─rlang::abort(...)
  ── Error ('test-split_violin_plot.R:118:3'): custom legend labels are applied ──
  Error in `geom_split_violin(trim = FALSE, size = 0.5, show.legend = FALSE, 
      adjust = 2.2)`: Problem while converting geom to grob.
  ℹ Error occurred in the 1st layer.
  Caused by error in `loadNamespace()`:
  ! there is no package called 'plyr'
  Backtrace:
       ▆
    1. ├─GroupComparison::split_violin_plot(...) at test-split_violin_plot.R:118:3
    2. │ └─gridExtra::grid.arrange(p, legend, ncol = 2, widths = c(3, 1))
    3. │   └─gridExtra::arrangeGrob(...)
    4. │     └─base::lapply(grobs[toconv], ggplot2::ggplotGrob)
    5. │       └─ggplot2 (local) FUN(X[[i]], ...)
    6. │         ├─ggplot2::ggplot_gtable(ggplot_build(x))
    7. │         └─ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
    8. │           └─ggplot2:::by_layer(...)
    9. │             ├─rlang::try_fetch(...)
   10. │             │ ├─base::tryCatch(...)
   11. │             │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   12. │             │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   13. │             │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   14. │             │ └─base::withCallingHandlers(...)
   15. │             └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
   16. │               └─l$draw_geom(d, layout)
   17. │                 └─ggplot2 (local) draw_geom(..., self = self)
   18. │                   └─self$geom$draw_layer(...)
   19. │                     └─ggplot2 (local) draw_layer(..., self = self)
   20. │                       └─base::lapply(...)
   21. │                         └─ggplot2 (local) FUN(X[[i]], ...)
   22. │                           ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
   23. │                           └─self$draw_panel(data, panel_params, coord, draw_quantiles = NULL)
   24. │                             └─ggplot2 (local) draw_panel(..., self = self)
   25. │                               └─base::lapply(...)
   26. │                                 └─ggplot2 (local) FUN(X[[i]], ...)
   27. │                                   └─self$draw_group(group, panel_params, coord, ...)
   28. │                                     └─GroupComparison (local) draw_group(..., self = self)
   29. ├─base::loadNamespace(x)
   30. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   31. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   32. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   33. │ └─base::stop(cond)
   34. └─rlang (local) `<fn>`(`<pckgNtFE>`)
   35.   └─handlers[[1L]](cnd)
   36.     └─cli::cli_abort(...)
   37.       └─rlang::abort(...)
  
  [ FAIL 8 | WARN 2 | SKIP 0 | PASS 17 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'GroupComparison-vignette.Rmd' using rmarkdown

Quitting from lines 101-132 [split-violin-plot] (GroupComparison-vignette.Rmd)
Error: processing vignette 'GroupComparison-vignette.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 1st layer.
Caused by error in `loadNamespace()`:
! there is no package called 'plyr'
--- failed re-building 'GroupComparison-vignette.Rmd'

SUMMARY: processing the following file failed:
  'GroupComparison-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 3 ERRORs, 1 WARNING, 3 NOTEs