* installing *source* package ‘GpGp’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.8 (12)’
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c matrix_mult.cpp -o matrix_mult.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c vecchia_loglik_grad_info.cpp -o vecchia_loglik_grad_info.o
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:10:
./covmatrix_funs_02.h:727:12: warning: unused variable 'nugget' [-Wunused-variable]
  727 |     double nugget = covparms( 0 )*covparms( 7 );
      |            ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:11:
./covmatrix_funs_03.h:95:12: warning: unused variable 'nugget' [-Wunused-variable]
   95 |     double nugget = covparms( 0 )*covparms( dim + 2 );
      |            ^~~~~~
./covmatrix_funs_03.h:229:12: warning: unused variable 'nugget' [-Wunused-variable]
  229 |     double nugget = covparms( 0 )*covparms( dim + 1 );
      |            ^~~~~~
./covmatrix_funs_03.h:337:12: warning: unused variable 'nugget' [-Wunused-variable]
  337 |     double nugget = covparms( 0 )*covparms( 4 );
      |            ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:17:
./covmatrix_funs_09.h:89:12: warning: unused variable 'nugget' [-Wunused-variable]
   89 |     double nugget = covparms( 0 )*covparms( dim + 1 );
      |            ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:18:
./covmatrix_funs_10.h:187:12: warning: unused variable 'nugget' [-Wunused-variable]
  187 |     double nugget = covparms( 0 )*covparms( dim + 1 );
      |            ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:19:
./covmatrix_funs_11.h:206:12: warning: unused variable 'nugget' [-Wunused-variable]
  206 |     double nugget = covparms( 0 )*covparms( dim + 1 );
      |            ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:20:
./covmatrix_funs_12.h:209:12: warning: unused variable 'nugget' [-Wunused-variable]
  209 |     double nugget = covparms( 0 )*covparms( dim + 1 );
      |            ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:21:
./covmatrix_funs_13.h:126:12: warning: unused variable 'nugget' [-Wunused-variable]
  126 |     double nugget = covparms( 0 )*covparms( 4 );
      |            ^~~~~~
./covmatrix_funs_13.h:127:9: warning: unused variable 'categ' [-Wunused-variable]
  127 |         double categ = covparms(0)*covparms(3);
      |                ^~~~~
./covmatrix_funs_13.h:542:12: warning: unused variable 'nugget' [-Wunused-variable]
  542 |     double nugget = covparms(0)*covparms(8);
      |            ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
./onepass.h:93:10: warning: variable 'pd' set but not used [-Wunused-but-set-variable]
   93 |     bool pd = true;
      |          ^
./onepass.h:700:9: warning: unused variable 'dim' [-Wunused-variable]
  700 |     int dim = locs.ncol();
      |         ^~~
13 warnings generated.
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o GpGp.so RcppExports.o matrix_mult.o vecchia_loglik_grad_info.o -llapack -L/home/hornik/tmp/R-d-clang-18/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-18/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/GpGp.Rcheck/00LOCK-GpGp/00new/GpGp/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GpGp)