* using log directory ‘/srv/hornik/tmp/CRAN_pretest/GitStats.Rcheck’
* using R Under development (unstable) (2024-10-17 r87242)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘GitStats/DESCRIPTION’ ... OK
* this is package ‘GitStats’ version ‘2.1.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Maciej Banas <banasmaciek@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  GitLab (2:39, 10:93)

Found the following (possibly) invalid URLs:
  URL: (https://github.com/r-world-devs/GitStats/issues/345)
    From: NEWS.md
    Message: Invalid URI scheme
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘GitStats’ can be installed ... [8s/8s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/4s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [6s/14s] ERROR
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [6s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(GitStats)
  > 
  > test_check("GitStats")
  
  ...
  [ FAIL 35 | WARN 0 | SKIP 51 | PASS 463 ]
  
  ══ Skipped tests (51) ══════════════════════════════════════════════════════════
  • On CRAN (51): 'test-01-get_repos-GitHub.R:4:3',
    'test-01-get_repos-GitHub.R:229:3', 'test-01-get_repos-GitHub.R:241:3',
    'test-01-get_repos-GitHub.R:402:3', 'test-01-get_repos-GitHub.R:472:3',
    'test-01-get_repos-GitLab.R:4:3', 'test-01-get_repos-GitLab.R:192:3',
    'test-01-get_repos-GitStats.R:75:3', 'test-get_commits-GitHub.R:9:3',
    'test-get_commits-GitLab.R:64:3', 'test-get_files_content-GitHub.R:4:3',
    'test-get_files_content-GitLab.R:4:3',
    'test-get_files_content-GitLab.R:114:3',
    'test-get_files_structure-GitHub.R:4:3',
    'test-get_files_structure-GitHub.R:204:3',
    'test-get_files_structure-GitHub.R:256:3',
    'test-get_files_structure-GitLab.R:4:3',
    'test-get_files_structure-GitLab.R:177:3',
    'test-get_files_structure-GitLab.R:238:3',
    'test-get_files_structure-GitStats.R:25:3',
    'test-get_files_structure-GitStats.R:40:3', 'test-get_release-GitHub.R:4:3',
    'test-get_release-GitLab.R:4:3', 'test-get_usage_R_package.R:98:3',
    'test-get_user-GitHub.R:4:3', 'test-get_user-GitLab.R:4:3',
    'test-helpers.R:2:3', 'test-helpers.R:38:3', 'test-helpers.R:46:3',
    'test-helpers.R:52:3', 'test-helpers.R:70:3', 'test-helpers.R:90:3',
    'test-helpers.R:114:3', 'test-helpers.R:145:3', 'test-helpers.R:155:3',
    'test-helpers.R:173:3', 'test-set_host.R:4:3', 'test-set_host.R:21:3',
    'test-set_host.R:31:3', 'test-set_host.R:43:3', 'test-set_host.R:59:3',
    'test-set_host.R:75:3', 'test-set_host.R:92:3', 'test-set_host.R:107:3',
    'test-set_host.R:128:3', 'test-set_host.R:145:3', 'test-z-GitStats.R:8:3',
    'test-z-GitStats.R:13:3', 'test-z-GitStats.R:34:3', 'test-z-GitStats.R:40:3',
    'test-z-GitStats.R:88:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-01-get_repos-GitHub.R:261:3'): `get_repos_issues()` adds issues to repos table ──
  Error in `if (nrow(repos_table) > 0) {
      repos_iterator <- paste0(repos_table$organization, "/", repos_table$repo_name)
      issues <- purrr::map_dfr(repos_iterator, function(repo_path) {
          issues_endpoint <- paste0(private$endpoints[["repositories"]], 
              repo_path, "/issues")
          issues <- self$response(endpoint = issues_endpoint)
          data.frame(open = length(purrr::keep(issues, ~.$state == 
              "open")), closed = length(purrr::keep(issues, ~.$state == 
              "closed")))
      }, .progress = if (progress) {
          "Pulling repositories issues..."
      }
      else {
          FALSE
      })
      repos_table$issues_open <- issues$open
      repos_table$issues_closed <- issues$closed
  }`: argument is of length zero
  Backtrace:
      ▆
   1. ├─base::suppressMessages(...) at test-01-get_repos-GitHub.R:261:3
   2. │ └─base::withCallingHandlers(...)
   3. └─test_rest_github$get_repos_issues(gh_repos_by_code_table, progress = FALSE)
  ── Failure ('test-01-get_repos-GitHub.R:294:3'): `get_repos_with_code_from_orgs()` works ──
  Names of `repos_object` ('') don't match 'repo_id', 'repo_name', 'default_branch', 'stars', 'forks', 'created_at', 'last_activity_at', 'languages', 'issues_open', 'issues_closed', 'organization', 'repo_url'
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(repos_with_code_from_orgs_full) at test-01-get_repos-GitHub.R:294:3
   2.   └─testthat::expect_named(repos_object, repo_cols) at tests/testthat/helper-expect-tables.R:35:3
  ── Failure ('test-01-get_repos-GitHub.R:294:3'): `get_repos_with_code_from_orgs()` works ──
  nrow(repos_object) is not strictly more than 0. Difference: 0
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(repos_with_code_from_orgs_full) at test-01-get_repos-GitHub.R:294:3
   2.   └─testthat::expect_gt(nrow(repos_object), 0) at tests/testthat/helper-expect-tables.R:36:3
  ── Failure ('test-01-get_repos-GitHub.R:314:3'): `get_repos_with_code_from_orgs()` pulls minimum version of table ──
  Names of `repos_object` ('') don't match 'repo_id', 'repo_name', 'default_branch', 'created_at', 'organization', 'repo_url'
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(...) at test-01-get_repos-GitHub.R:314:3
   2.   └─testthat::expect_named(repos_object, repo_cols) at tests/testthat/helper-expect-tables.R:35:3
  ── Failure ('test-01-get_repos-GitHub.R:314:3'): `get_repos_with_code_from_orgs()` pulls minimum version of table ──
  nrow(repos_object) is not strictly more than 0. Difference: 0
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(...) at test-01-get_repos-GitHub.R:314:3
   2.   └─testthat::expect_gt(nrow(repos_object), 0) at tests/testthat/helper-expect-tables.R:36:3
  ── Failure ('test-01-get_repos-GitHub.R:362:3'): get_repos_with_code() works ───
  Names of `repos_object` ('') don't match 'repo_id', 'repo_name', 'default_branch', 'stars', 'forks', 'created_at', 'last_activity_at', 'languages', 'issues_open', 'issues_closed', 'organization', 'repo_url'
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(github_repos_with_code) at test-01-get_repos-GitHub.R:362:3
   2.   └─testthat::expect_named(repos_object, repo_cols) at tests/testthat/helper-expect-tables.R:35:3
  ── Failure ('test-01-get_repos-GitHub.R:362:3'): get_repos_with_code() works ───
  nrow(repos_object) is not strictly more than 0. Difference: 0
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(github_repos_with_code) at test-01-get_repos-GitHub.R:362:3
   2.   └─testthat::expect_gt(nrow(repos_object), 0) at tests/testthat/helper-expect-tables.R:36:3
  ── Failure ('test-01-get_repos-GitHub.R:379:3'): get_repos_with_code() works ───
  Names of `repos_object` ('') don't match 'repo_id', 'repo_name', 'default_branch', 'created_at', 'organization', 'repo_url'
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(github_repos_with_code_min, repo_cols = repo_min_colnames) at test-01-get_repos-GitHub.R:379:3
   2.   └─testthat::expect_named(repos_object, repo_cols) at tests/testthat/helper-expect-tables.R:35:3
  ── Failure ('test-01-get_repos-GitHub.R:379:3'): get_repos_with_code() works ───
  nrow(repos_object) is not strictly more than 0. Difference: 0
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(github_repos_with_code_min, repo_cols = repo_min_colnames) at test-01-get_repos-GitHub.R:379:3
   2.   └─testthat::expect_gt(nrow(repos_object), 0) at tests/testthat/helper-expect-tables.R:36:3
  ── Failure ('test-01-get_repos-GitHub.R:541:3'): `get_repos()` pulls table in minimalist version ──
  `repos_object` is not an S3 object
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(...) at test-01-get_repos-GitHub.R:541:3
   2.   └─testthat::expect_s3_class(repos_object, "data.frame") at tests/testthat/helper-expect-tables.R:34:3
  ── Failure ('test-01-get_repos-GitHub.R:541:3'): `get_repos()` pulls table in minimalist version ──
  Names of `repos_object` ('') don't match 'repo_id', 'repo_name', 'default_branch', 'created_at', 'organization', 'repo_url', 'api_url', 'platform'
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(...) at test-01-get_repos-GitHub.R:541:3
   2.   └─testthat::expect_named(repos_object, repo_cols) at tests/testthat/helper-expect-tables.R:35:3
  ── Error ('test-01-get_repos-GitHub.R:541:3'): `get_repos()` pulls table in minimalist version ──
  Error in `expect_compare(">", act, exp)`: Result of comparison must be a single logical value
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(...) at test-01-get_repos-GitHub.R:541:3
   2.   └─testthat::expect_gt(nrow(repos_object), 0) at tests/testthat/helper-expect-tables.R:36:3
   3.     └─testthat:::expect_compare(">", act, exp)
   4.       └─rlang::abort("Result of comparison must be a single logical value")
  ── Error ('test-01-get_repos-GitLab.R:211:3'): `get_repos_issues()` adds issues to repos table ──
  Error in `if (nrow(repos_table) > 0) {
      issues <- purrr::map(repos_table$repo_id, function(repos_id) {
          id <- gsub("gid://gitlab/Project/", "", repos_id)
          issues_endpoint <- paste0(self$rest_api_url, "/projects/", 
              id, "/issues_statistics")
          self$response(endpoint = issues_endpoint)[["statistics"]][["counts"]]
      }, .progress = if (progress) {
          "Pulling repositories issues..."
      }
      else {
          FALSE
      })
      repos_table$issues_open <- purrr::map_dbl(issues, ~.$opened)
      repos_table$issues_closed <- purrr::map_dbl(issues, ~.$closed)
  }`: argument is of length zero
  Backtrace:
      ▆
   1. └─test_rest_gitlab$get_repos_issues(gl_repos_by_code_table, progress = FALSE) at test-01-get_repos-GitLab.R:211:3
  ── Failure ('test-01-get_repos-GitStats.R:41:3'): get_repos_from_hosts pulls table in minimalist version ──
  Names of `repos_object` ('') don't match 'repo_id', 'repo_name', 'default_branch', 'created_at', 'organization', 'repo_url', 'api_url', 'platform'
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(...) at test-01-get_repos-GitStats.R:41:3
   2.   └─testthat::expect_named(repos_object, repo_cols) at tests/testthat/helper-expect-tables.R:35:3
  ── Failure ('test-01-get_repos-GitStats.R:41:3'): get_repos_from_hosts pulls table in minimalist version ──
  nrow(repos_object) is not strictly more than 0. Difference: 0
  Backtrace:
      ▆
   1. └─GitStats:::expect_repos_table(...) at test-01-get_repos-GitStats.R:41:3
   2.   └─testthat::expect_gt(nrow(repos_object), 0) at tests/testthat/helper-expect-tables.R:36:3
  ── Failure ('test-get_commits-GitLab.R:91:3'): get_commits_from_orgs works ─────
  Names of `get_commits_object` ('id', 'committed_date', 'author', 'additions', 'deletions', 'repository', 'organization', 'api_url') don't match 'id', 'committed_date', 'author', 'author_login', 'author_name', 'additions', 'deletions', 'repository', 'organization', 'api_url'
  Backtrace:
      ▆
   1. └─GitStats:::expect_commits_table(gl_commits_table) at test-get_commits-GitLab.R:91:3
   2.   └─testthat::expect_named(get_commits_object, commit_cols) at tests/testthat/helper-expect-tables.R:52:3
  ── Failure ('test-get_commits-GitLab.R:108:3'): get_commits for GitLab works with repos implied ──
  Names of `get_commits_object` ('id', 'committed_date', 'author', 'additions', 'deletions', 'repository', 'organization', 'api_url') don't match 'id', 'committed_date', 'author', 'author_login', 'author_name', 'additions', 'deletions', 'repository', 'organization', 'api_url'
  Backtrace:
      ▆
   1. └─GitStats:::expect_commits_table(gl_commits_table) at test-get_commits-GitLab.R:108:3
   2.   └─testthat::expect_named(get_commits_object, commit_cols) at tests/testthat/helper-expect-tables.R:52:3
  ── Failure ('test-get_files_content-GitLab.R:139:3'): checker properly identifies gitlab files responses ──
  test_graphql_gitlab_priv$response_prepared_by_iteration(files_response = test_mocker$use("gitlab_files_response_by_repos")) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-get_files_content-GitLab.R:162:3'): GitLab prepares table from files response prepared in alternative way ──
  `files_object` is not an S3 object
  Backtrace:
      ▆
   1. └─GitStats:::expect_files_table(gl_files_table) at test-get_files_content-GitLab.R:162:3
   2.   └─testthat::expect_s3_class(files_object, "data.frame") at tests/testthat/helper-expect-tables.R:76:3
  ── Failure ('test-get_files_content-GitLab.R:162:3'): GitLab prepares table from files response prepared in alternative way ──
  Names of `files_object` ('') don't match 'repo_name', 'repo_id', 'organization', 'file_path', 'file_content', 'file_size', 'repo_url'
  Backtrace:
      ▆
   1. └─GitStats:::expect_files_table(gl_files_table) at test-get_files_content-GitLab.R:162:3
   2.   └─testthat::expect_named(...) at tests/testthat/helper-expect-tables.R:77:3
  ── Failure ('test-get_files_content-GitLab.R:162:3'): GitLab prepares table from files response prepared in alternative way ──
  files_object$file_size has type 'NULL', not 'integer'.
  Backtrace:
      ▆
   1. └─GitStats:::expect_files_table(gl_files_table) at test-get_files_content-GitLab.R:162:3
   2.   └─testthat::expect_type(files_object$file_size, "integer") at tests/testthat/helper-expect-tables.R:83:3
  ── Error ('test-get_files_content-GitLab.R:162:3'): GitLab prepares table from files response prepared in alternative way ──
  Error in `expect_compare(">", act, exp)`: Result of comparison must be a single logical value
  Backtrace:
      ▆
   1. └─GitStats:::expect_files_table(gl_files_table) at test-get_files_content-GitLab.R:162:3
   2.   └─testthat::expect_gt(nrow(files_object), 0) at tests/testthat/helper-expect-tables.R:84:3
   3.     └─testthat:::expect_compare(">", act, exp)
   4.       └─rlang::abort("Result of comparison must be a single logical value")
  ── Failure ('test-get_files_structure-GitLab.R:206:3'): get_path_from_files_structure gets file path from files structure ──
  typeof(file_path) (`actual`) not equal to "character" (`expected`).
  
  `actual`:   "NULL"     
  `expected`: "character"
  ── Failure ('test-get_files_structure-GitLab.R:207:3'): get_path_from_files_structure gets file path from files structure ──
  length(file_path) > 0 is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-get_files_structure-GitLab.R:222:3'): get_files_structure pulls files structure for repositories in orgs ──
  names(gl_files_structure_from_orgs) (`actual`) not equal to c("mbtests") (`expected`).
  
  `actual` is NULL
  `expected` is a character vector ('mbtests')
  ── Failure ('test-get_usage_R_package.R:15:3'): get_R_package_as_dependency work correctly ──
  nrow(R_package_as_dependency) is not strictly more than 0. Difference: 0
  ── Failure ('test-get_usage_R_package.R:36:3'): get_R_package_loading work correctly ──
  nrow(R_package_loading) is not strictly more than 0. Difference: 0
  ── Failure ('test-get_usage_R_package.R:60:3'): get_R_package_usage_from_hosts works as expected ──
  Names of `object` ('') don't match 'package', 'package_usage', 'repo_id', 'repo_fullname', 'repo_name', 'default_branch', 'created_at', 'organization', 'repo_url', 'api_url', 'platform'
  Backtrace:
      ▆
   1. └─GitStats:::expect_package_usage_table(R_package_usage_table) at test-get_usage_R_package.R:60:3
   2.   └─testthat::expect_named(...) at tests/testthat/helper-expect-tables.R:16:3
  ── Failure ('test-get_usage_R_package.R:60:3'): get_R_package_usage_from_hosts works as expected ──
  nrow(object) is not strictly more than 0. Difference: 0
  Backtrace:
      ▆
   1. └─GitStats:::expect_package_usage_table(R_package_usage_table) at test-get_usage_R_package.R:60:3
   2.   └─testthat::expect_gt(nrow(object), 0) at tests/testthat/helper-expect-tables.R:19:3
  ── Error ('test-get_usage_R_package.R:83:3'): get_R_package_usage_from_hosts with split_output works ──
  <purrr_error_indexed/rlang_error/error/condition>
  Error in `map(.x, .f, ..., .progress = .progress)`: i In index: 1.
  i With name: shiny.
  Caused by error:
  ! Names of `object` ('') don't match 'package', 'package_usage', 'repo_id', 'repo_fullname', 'repo_name', 'default_branch', 'created_at', 'organization', 'repo_url', 'api_url', 'platform'
  ── Failure ('test-get_usage_R_package.R:117:3'): get_R_package_usage works ─────
  Names of `object` ('') don't match 'package', 'package_usage', 'repo_id', 'repo_fullname', 'repo_name', 'default_branch', 'created_at', 'organization', 'repo_url', 'api_url', 'platform'
  Backtrace:
      ▆
   1. └─GitStats:::expect_package_usage_table(R_package_usage_table) at test-get_usage_R_package.R:117:3
   2.   └─testthat::expect_named(...) at tests/testthat/helper-expect-tables.R:16:3
  ── Failure ('test-get_usage_R_package.R:117:3'): get_R_package_usage works ─────
  nrow(object) is not strictly more than 0. Difference: 0
  Backtrace:
      ▆
   1. └─GitStats:::expect_package_usage_table(R_package_usage_table) at test-get_usage_R_package.R:117:3
   2.   └─testthat::expect_gt(nrow(object), 0) at tests/testthat/helper-expect-tables.R:19:3
  ── Failure ('test-get_usage_R_package.R:118:3'): get_R_package_usage works ─────
  `R_package_usage_table` inherits from 'tbl_df'/'tbl'/'data.frame' not 'R_package_usage'.
  ── Error ('test-z-GitStats.R:17:3'): GitStats prints the proper info when repos are passed instead of orgs. ──
  Error: x Token exists but does not grant access.
  i Check if you use correct token.
  ! Scope that is needed: [public_repo, read:org, read:user].
  Backtrace:
       ▆
    1. ├─base::suppressMessages(...) at test-z-GitStats.R:17:3
    2. │ └─base::withCallingHandlers(...)
    3. ├─... %>% ...
    4. ├─GitStats::set_gitlab_host(...)
    5. └─GitStats::set_github_host(...)
    6.   └─gitstats_object$set_github_host(...)
    7.     └─GitHostGitHub$new(...)
    8.       └─GitStats (local) initialize(...)
    9.         └─super$initialize(...)
   10.           └─private$set_token(token = token, verbose = verbose)
   11.             └─private$check_token(token)
   12.               └─cli::cli_abort(...)
   13.                 └─rlang::abort(...)
  ── Error ('test-z-GitStats.R:110:1'): (code run outside of `test_that()`) ──────
  Error in `private$check_token(token)`: ℹ No token provided.
  Backtrace:
       ▆
    1. ├─base::suppressMessages(...) at test-z-GitStats.R:110:1
    2. │ └─base::withCallingHandlers(...)
    3. ├─create_gitstats() %>% ...
    4. └─GitStats::set_gitlab_host(...)
    5.   └─gitstats_object$set_gitlab_host(...)
    6.     └─GitHostGitLab$new(...)
    7.       └─GitStats (local) initialize(...)
    8.         └─super$initialize(...)
    9.           └─private$set_token(token = token, verbose = verbose)
   10.             └─private$check_token(token)
   11.               └─cli::cli_abort(c(i = "No token provided."))
   12.                 └─rlang::abort(...)
  
  [ FAIL 35 | WARN 0 | SKIP 51 | PASS 463 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s/2s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE