* installing *source* package ‘GiRaF’ ... ** this is package ‘GiRaF’ version ‘1.0.2’ ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.7 (3+b2)’ clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c RcppExports.cpp -o RcppExports.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c lattice.cpp -o lattice.o In file included from lattice.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 408 | property_ptr m_property; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here 212 | typename return_void< typename Graph::graph_tag >::type > | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] 226 | : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 235 | : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, | ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 50 | typedef boost::property_map ::type VertexMap; | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c rcpp_module.cpp -o rcpp_module.o In file included from rcpp_module.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 408 | property_ptr m_property; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here 212 | typename return_void< typename Graph::graph_tag >::type > | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] 226 | : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 235 | : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, | ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 50 | typedef boost::property_map ::type VertexMap; | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c recursion.cpp -o recursion.o In file included from recursion.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 408 | property_ptr m_property; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here 212 | typename return_void< typename Graph::graph_tag >::type > | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] 226 | : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 235 | : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, | ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 50 | typedef boost::property_map ::type VertexMap; | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c sampler.cpp -o sampler.o In file included from sampler.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 408 | property_ptr m_property; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here 212 | typename return_void< typename Graph::graph_tag >::type > | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] 226 | : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 235 | : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, | ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here 50 | typedef boost::property_map ::type VertexMap; | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o GiRaF.so RcppExports.o lattice.o rcpp_module.o recursion.o sampler.o -L/home/hornik/tmp/R/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/GiRaF.Rcheck/00LOCK-GiRaF/00new/GiRaF/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GiRaF)