Package check result: OK

Changes to worse in reverse depends:

Package: mlr3pipelines
Check: tests
New result: ERROR
    Running ‘testthat.R’ [251s/115s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > if (requireNamespace("testthat", quietly = TRUE)) {
    +   library("checkmate")
    +   library("testthat")
    +   library("mlr3")
    +   library("paradox")
    +   library("mlr3pipelines")
    +   test_check("mlr3pipelines")
    + }
    Starting 2 test processes.
    > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_PipeOp.R: Training test_autotrain
    > test_PipeOp.R: Predicting test_autotrain
    > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
    Saving _problems/test_filter_ensemble-294.R
    Saving _problems/test_filter_ensemble-307.R
    > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
    > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
    > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
    > test_multiplicities.R: 
    > test_multiplicities.R: [[1]]
    > test_multiplicities.R: [1] 0
    > test_multiplicities.R: 
    > test_multiplicities.R: 
    > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
    > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
    > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
    > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.520542: Isomap START
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.52131: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.530798: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.544475: Classical Scaling
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.57981: Isomap START
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.580225: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.586009: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.599153: Classical Scaling
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.617937: L-Isomap embed START
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.618505: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.630341: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.661252: embedding
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.662324: DONE
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.679082: L-Isomap embed START
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.679506: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.689955: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.721514: embedding
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.722535: DONE
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.781888: Isomap START
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.782271: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.792964: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.864247: Classical Scaling
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.88679: L-Isomap embed START
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.887359: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:28.909363: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.054703: embedding
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.068628: DONE
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.168269: Isomap START
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.168631: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.174115: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.186716: Classical Scaling
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.206126: L-Isomap embed START
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.206658: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.217264: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.247395: embedding
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.248366: DONE
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.370583: Isomap START
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.371328: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.383784: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.397614: Classical Scaling
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.429301: L-Isomap embed START
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.429828: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.443677: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.472597: embedding
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.473733: DONE
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.529559: Isomap START
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.529967: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.53598: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.548484: Classical Scaling
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.650347: L-Isomap embed START
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.650902: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.661773: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.691402: embedding
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.692495: DONE
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.744678: Isomap START
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.745012: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.750108: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.764706: Classical Scaling
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.793492: L-Isomap embed START
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.793971: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.805235: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.833924: embedding
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.834845: DONE
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.879842: Isomap START
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.88015: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.885772: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.897968: Classical Scaling
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.923979: L-Isomap embed START
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.924413: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.935151: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.964153: embedding
    > test_pipeop_isomap.R: 2025-11-16 11:55:29.965086: DONE
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.027032: Isomap START
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.027337: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.032487: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.044937: Classical Scaling
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.088635: Isomap START
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.088939: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.094067: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.106296: Classical Scaling
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.119872: Isomap START
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.120171: constructing knn graph
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.125028: calculating geodesic distances
    > test_pipeop_isomap.R: 2025-11-16 11:55:30.137298: Classical Scaling
    > test_pipeop_nmf.R: [PipeOpNMFstate]
    > test_pipeop_nmf.R: [PipeOpNMFstate]
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_task_preproc.R: Training debug_affectcols
    > test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
    > test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
    > test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
    > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
    > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
    > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
    > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
    > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
    > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
    > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
    [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
    
    ══ Skipped tests (100) ═════════════════════════════════════════════════════════
    • On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
      'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
      'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
      'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
      'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
      'test_learner_weightedaverage.R:57:3',
      'test_learner_weightedaverage.R:105:3',
      'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
      'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
      'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
      'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
      'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
      'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
      'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
      'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
      'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
      'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',
      'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
      'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
      'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
      'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
      'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
      'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
      'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
      'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
      'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
      'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
      'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_learnercv.R:31:3',
      'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
      'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
      'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
      'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
      'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
      'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
      'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
      'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
      'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
      'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
      'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:6:3',
      'test_pipeop_nmf.R:6:3', 'test_pipeop_targetinvert.R:4:3',
      'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
      'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
      'test_pipeop_task_preproc.R:14:3', 'test_pipeop_subsample.R:6:3',
      'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
      'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
      'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
      'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
      'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
    • Skipping (1): 'test_GraphLearner.R:1278:3'
    • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
      'test_ppl.R:61:1'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
    Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
    Differences:
    `actual`:   FALSE
    `expected`: TRUE 
    
    ── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
    Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
    Differences:
    `actual` is a character vector ('Mean relative difference: 0.3042771')
    `expected` is a logical vector (TRUE)
    
    Backtrace:
        ▆
     1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
     2.   └─testthat::expect_true(...)
    
    [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
    Error:
    ! Test failures.
    Execution halted