* using log directory 'd:/RCompile/CRANincoming/R-devel/GauPro.Rcheck'
* using R Under development (unstable) (2025-11-18 r89035 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'GauPro/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GauPro' version '0.2.17'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [12s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'GauPro' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 14.3.0'
* used C++ compiler: 'g++.exe (GCC) 14.3.0'
* checking C++ specification ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [23s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [91s] OK
  Running 'testthat.R' [90s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [21s] OK
* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... [27s] NOTE
Found the following HTML validation problems:
GauPro.html:5135:1 (GauPro_kernel_model.Rd:204): Warning: <a> anchor "method-GauPro-new" already defined
GauPro.html:5231:1 (GauPro_kernel_model.Rd:288): Warning: <a> anchor "method-GauPro-fit" already defined
GauPro.html:5262:1 (GauPro_kernel_model.Rd:307): Warning: <a> anchor "method-GauPro-update_K_and_estimates" already defined
GauPro.html:5278:1 (GauPro_kernel_model.Rd:317): Warning: <a> anchor "method-GauPro-predict" already defined
GauPro.html:5325:1 (GauPro_kernel_model.Rd:352): Warning: <a> anchor "method-GauPro-pred" already defined
GauPro.html:5372:1 (GauPro_kernel_model.Rd:387): Warning: <a> anchor "method-GauPro-pred_one_matrix" already defined
GauPro.html:5416:1 (GauPro_kernel_model.Rd:419): Warning: <a> anchor "method-GauPro-pred_mean" already defined
GauPro.html:5447:1 (GauPro_kernel_model.Rd:438): Warning: <a> anchor "method-GauPro-pred_meanC" already defined
GauPro.html:5478:1 (GauPro_kernel_model.Rd:457): Warning: <a> anchor "method-GauPro-pred_var" already defined
GauPro.html:5513:1 (GauPro_kernel_model.Rd:480): Warning: <a> anchor "method-GauPro-pred_LOO" already defined
GauPro.html:5666:1 (GauPro_kernel_model.Rd:573): Warning: <a> anchor "method-GauPro-plot" already defined
GauPro.html:5695:1 (GauPro_kernel_model.Rd:590): Warning: <a> anchor "method-GauPro-cool1Dplot" already defined
GauPro.html:5753:1 (GauPro_kernel_model.Rd:636): Warning: <a> anchor "method-GauPro-plot1D" already defined
GauPro.html:5814:1 (GauPro_kernel_model.Rd:685): Warning: <a> anchor "method-GauPro-plot2D" already defined
GauPro.html:5989:1 (GauPro_kernel_model.Rd:794): Warning: <a> anchor "method-GauPro-loglikelihood" already defined
GauPro.html:6220:1 (GauPro_kernel_model.Rd:935): Warning: <a> anchor "method-GauPro-optim" already defined
GauPro.html:6267:1 (GauPro_kernel_model.Rd:970): Warning: <a> anchor "method-GauPro-optimRestart" already defined
GauPro.html:6329:1 (GauPro_kernel_model.Rd:1020): Warning: <a> anchor "method-GauPro-update" already defined
GauPro.html:6444:1 (GauPro_kernel_model.Rd:1099): Warning: <a> anchor "method-GauPro-update_data" already defined
GauPro.html:6485:1 (GauPro_kernel_model.Rd:1128): Warning: <a> anchor "method-GauPro-update_corrparams" already defined
GauPro.html:6514:1 (GauPro_kernel_model.Rd:1145): Warning: <a> anchor "method-GauPro-update_nugget" already defined
GauPro.html:6726:1 (GauPro_kernel_model.Rd:1297): Warning: <a> anchor "method-GauPro-grad_norm" already defined
GauPro.html:6964:1 (GauPro_kernel_model.Rd:1439): Warning: <a> anchor "method-GauPro-sample" already defined
GauPro.html:7379:1 (GauPro_kernel_model.Rd:1746): Warning: <a> anchor "method-GauPro-print" already defined
GauPro.html:7424:1 (GauPro_kernel_model.Rd:1773): Warning: <a> anchor "method-GauPro-clone" already defined
* DONE
Status: 1 NOTE