* using log directory ‘/srv/hornik/tmp/CRAN_pretest/GauPro.Rcheck’
* using R Under development (unstable) (2025-11-19 r89037)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.5 (1)
    Debian flang version 21.1.5 (1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘GauPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GauPro’ version ‘0.2.17’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/6s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘GauPro’ can be installed ... [89s/90s] OK
* used C compiler: ‘Debian clang version 21.1.5 (1)’
* used C++ compiler: ‘Debian clang version 21.1.5 (1)’
* checking C++ specification ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/8s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [17s/17s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [74s/74s] OK
  Running ‘testthat.R’ [74s/74s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [18s/21s] OK
* checking PDF version of manual ... [8s/7s] OK
* checking HTML version of manual ... [8s/8s] NOTE
Found the following HTML validation problems:
GauPro.html:5131:1 (GauPro_kernel_model.Rd:204): Warning: <a> anchor "method-GauPro-new" already defined
GauPro.html:5227:1 (GauPro_kernel_model.Rd:288): Warning: <a> anchor "method-GauPro-fit" already defined
GauPro.html:5258:1 (GauPro_kernel_model.Rd:307): Warning: <a> anchor "method-GauPro-update_K_and_estimates" already defined
GauPro.html:5274:1 (GauPro_kernel_model.Rd:317): Warning: <a> anchor "method-GauPro-predict" already defined
GauPro.html:5321:1 (GauPro_kernel_model.Rd:352): Warning: <a> anchor "method-GauPro-pred" already defined
GauPro.html:5368:1 (GauPro_kernel_model.Rd:387): Warning: <a> anchor "method-GauPro-pred_one_matrix" already defined
GauPro.html:5412:1 (GauPro_kernel_model.Rd:419): Warning: <a> anchor "method-GauPro-pred_mean" already defined
GauPro.html:5443:1 (GauPro_kernel_model.Rd:438): Warning: <a> anchor "method-GauPro-pred_meanC" already defined
GauPro.html:5474:1 (GauPro_kernel_model.Rd:457): Warning: <a> anchor "method-GauPro-pred_var" already defined
GauPro.html:5509:1 (GauPro_kernel_model.Rd:480): Warning: <a> anchor "method-GauPro-pred_LOO" already defined
GauPro.html:5662:1 (GauPro_kernel_model.Rd:573): Warning: <a> anchor "method-GauPro-plot" already defined
GauPro.html:5691:1 (GauPro_kernel_model.Rd:590): Warning: <a> anchor "method-GauPro-cool1Dplot" already defined
GauPro.html:5749:1 (GauPro_kernel_model.Rd:636): Warning: <a> anchor "method-GauPro-plot1D" already defined
GauPro.html:5810:1 (GauPro_kernel_model.Rd:685): Warning: <a> anchor "method-GauPro-plot2D" already defined
GauPro.html:5985:1 (GauPro_kernel_model.Rd:794): Warning: <a> anchor "method-GauPro-loglikelihood" already defined
GauPro.html:6216:1 (GauPro_kernel_model.Rd:935): Warning: <a> anchor "method-GauPro-optim" already defined
GauPro.html:6263:1 (GauPro_kernel_model.Rd:970): Warning: <a> anchor "method-GauPro-optimRestart" already defined
GauPro.html:6325:1 (GauPro_kernel_model.Rd:1020): Warning: <a> anchor "method-GauPro-update" already defined
GauPro.html:6440:1 (GauPro_kernel_model.Rd:1099): Warning: <a> anchor "method-GauPro-update_data" already defined
GauPro.html:6481:1 (GauPro_kernel_model.Rd:1128): Warning: <a> anchor "method-GauPro-update_corrparams" already defined
GauPro.html:6510:1 (GauPro_kernel_model.Rd:1145): Warning: <a> anchor "method-GauPro-update_nugget" already defined
GauPro.html:6722:1 (GauPro_kernel_model.Rd:1297): Warning: <a> anchor "method-GauPro-grad_norm" already defined
GauPro.html:6960:1 (GauPro_kernel_model.Rd:1439): Warning: <a> anchor "method-GauPro-sample" already defined
GauPro.html:7375:1 (GauPro_kernel_model.Rd:1746): Warning: <a> anchor "method-GauPro-print" already defined
GauPro.html:7420:1 (GauPro_kernel_model.Rd:1773): Warning: <a> anchor "method-GauPro-clone" already defined
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE