* using log directory 'd:/RCompile/CRANincoming/R-devel/GapAnalysis.Rcheck'
* using R Under development (unstable) (2025-09-15 r88837 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'GapAnalysis/DESCRIPTION' ... OK
* this is package 'GapAnalysis' version '2.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Julian Ramirez-Villegas <J.R.Villegas@cgiar.org>'

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Khoury (22:87, 22:139, 22:197)
  Villegas (23:78)
  al (22:26, 22:97, 22:149, 22:207, 23:24, 23:90)
  et (22:23, 22:94, 22:146, 22:204, 23:21, 23:87)
  genebanks (21:23)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2023-06-09 as issues were not corrected
    in time.

Found the following (possibly) invalid URLs:
  URL: https://dataverse.harvard.edu/dataverse/GapAnalysis
    From: man/CucurbitaData.Rd
          man/CucurbitaRasters.Rd
    Status: 202
    Message: Accepted
  URL: https://www.protectedplanet.net/ (moved to https://www.protectedplanet.net/en)
    From: man/ProtectedAreas.Rd
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.

The Description field contains
  <https://doi.org/10.1111/ecog.05430>, building on Khoury et al. (2020)
Please write DOIs as <doi:prefix/suffix>.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GapAnalysis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s] NOTE
ERSex: no visible binding for global variable 'id_column'
ERSex: no visible binding for global variable 'sdmSum'
ERSex: no visible binding for global variable 'ecoID'
ERSex: no visible binding for global variable 'count'
ERSex: no visible binding for global variable 'bufferEcos'
SRSin: no visible binding for global variable 'species'
checkOccurrences: no visible binding for global variable 'index'
generateCounts: no visible binding for global variable 'species'
generateCounts: no visible binding for global variable 'latitude'
generateCounts: no visible binding for global variable 'longitude'
generateCounts: no visible binding for global variable 'hasLat'
generateCounts: no visible binding for global variable 'hasLong'
generateCounts: no visible binding for global variable 'type'
generateCounts: no visible binding for global variable 'hasLatLong'
generateEcoSelection: no visible binding for global variable 'species'
generateGBuffers: no visible binding for global variable 'species'
generateGBuffers: no visible binding for global variable 'type'
Undefined global functions or variables:
  bufferEcos count ecoID hasLat hasLatLong hasLong id_column index
  latitude longitude sdmSum species type
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [10s] OK
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs