* using log directory 'd:/RCompile/CRANincoming/R-devel/GalaxyR.Rcheck'
* using R Under development (unstable) (2026-01-22 r89323 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'GalaxyR/DESCRIPTION' ... OK
* this is package 'GalaxyR' version '0.0.0.9000'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Julian Frey <julian.frey@wwd.uni-freiburg.de>'

New submission

Version contains large components (0.0.0.9000)

Possibly misspelled words in DESCRIPTION:
  Renviron (8:372)
  plattforms (8:172)

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Title field should be in title case. Current version is:
  'Galaxy API Implementation to run Workflows'
In title case that is:
  'Galaxy API Implementation to Run Workflows'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'GalaxyR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... NOTE
Found the following HTML validation problems:
galaxy_delete_dataset.html:69:15 (galaxy_delete_dataset.Rd:42): Error: <id> is not recognized!
galaxy_delete_dataset.html:69:15 (galaxy_delete_dataset.Rd:42): Warning: discarding unexpected <id>
GalaxyR.html:303:15 (galaxy_delete_dataset.Rd:42): Error: <id> is not recognized!
GalaxyR.html:303:15 (galaxy_delete_dataset.Rd:42): Warning: discarding unexpected <id>
* DONE
Status: 2 NOTEs