* using log directory 'd:/RCompile/CRANincoming/R-devel/GUEST.Rcheck' * using R Under development (unstable) (2024-05-12 r86534 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'GUEST/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'GUEST' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Hui-Shan Tsao ' New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GUEST' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [150s] ERROR Running examples in 'GUEST-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: LDA.boost > ### Title: Implementation of the linear discriminant function for > ### multi-label classification. > ### Aliases: LDA.boost > ### Keywords: classif > > ### ** Examples > > data(MedulloblastomaData) > > X <- t(MedulloblastomaData[2:655,]) #covariates > Y <- MedulloblastomaData[1,] #response > > X <- matrix(as.numeric(X),nrow=23) > > p <- ncol(X) > n <- nrow(X) > > #standarization > X_new=data.frame() > for (i in 1:p){ + X_new[1:n,i]=(X[,i]-rep(mean(X[,i]),n))/sd(X[,i]) + } > X_new=matrix(unlist(X_new),nrow = n) > > #estimate graphical model > result <- boost.graph(data = X_new, thre = 0.2, ite1 = 3, ite2 = 0, ite3 = 0, rep = 1) Error in require_namespaces(c("network", "sna", "scales")) : please install the package 'sna'. install.packages('sna') Calls: boost.graph -> -> require_namespaces Execution halted * checking PDF version of manual ... [13s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE