* using log directory ‘/home/hornik/tmp/CRAN_special_gcc-san/GRIN2.Rcheck’
* using R Under development (unstable) (2025-06-16 r88324)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘GRIN2/DESCRIPTION’ ... OK
* this is package ‘GRIN2’ version ‘2.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GRIN2’ can be installed ... [27s/27s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [6s/6s] OK
* checking whether the package can be loaded with stated dependencies ... [5s/5s] OK
* checking whether the package can be unloaded cleanly ... [5s/5s] OK
* checking whether the namespace can be loaded with stated dependencies ... [5s/5s] OK
* checking whether the namespace can be unloaded cleanly ... [6s/6s] OK
* checking loading without being on the library search path ... [6s/6s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [50s/50s] OK
* checking Rd files ... [2s/2s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [131s/134s] OK
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
grin.assoc.lsn.outcome   11.729  0.360  12.095
alex.boxplots             8.695  0.144   8.844
compute.gw.coordinates    6.456  0.356   6.817
genomewide.lsn.plot       6.248  0.423   6.775
grin.barplt               6.025  0.340   6.369
write.grin.xlsx           5.870  0.296   6.214
prob.hits                 5.541  0.248   5.792
grin.oncoprint.mtx        5.440  0.304   5.747
KW.hit.express            5.341  0.264   5.609
top.alex.waterfall.plots  5.395  0.148   5.545
grin.stats.lsn.plot       5.408  0.132   5.542
grin.stats                5.325  0.120   5.448
alex.waterfall.plot       5.256  0.184   5.443
alex.waterfall.prep       5.153  0.108   5.265
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [89s/89s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [4s/4s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: OK