* using log directory ‘/srv/hornik/tmp/CRAN_pretest/GRAB.Rcheck’
* using R Under development (unstable) (2025-07-14 r88410)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3)
    Debian flang-new version 19.1.7 (3)
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘GRAB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GRAB’ version ‘0.2.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Woody Miao <miaolin@pku.edu.cn>’

New submission

Possibly misspelled words in DESCRIPTION:
  Analaysis (3:27)
  Biobank (3:41)
  biobank (8:49)

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wenjian",
                      family = "Bi",
                      role = "aut"),
               person(given = "Wei",
                      family = "Zhou",
                      role = "aut"),
               person(given = "Rounak",
                      family = "Dey",
                      role = "aut"),
               person(given = "Zhangchen",
                      family = "Zhao",
                      role = "aut"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut"),
               person(given = "Woody",
                      family = "Miao",
                      role = "cre",
                      email = "miaolin@pku.edu.cn"))
as necessary.

The Title field should be in title case. Current version is:
  ‘Genome-wide Robust Analaysis for Biobank data (GRAB)’
In title case that is:
  ‘Genome-Wide Robust Analaysis for Biobank Data (GRAB)’

Size of tarball: 10106009 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GRAB’ can be installed ... [75s/75s] WARNING
Found the following significant warnings:
  ./../inst/include/SAGELD.hpp:644:12: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  ./../inst/include/SPAmix.hpp:281:30: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See ‘/srv/hornik/tmp/CRAN_pretest/GRAB.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (3+b1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  GRAB.NullModel.Rd: defaultNumThreads, setThreadOptions
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [55s/22s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
GRAB.POLMM     19.723  0.351   3.351
GRAB.NullModel 17.905  0.727   2.150
Examples with CPU time > 2.5 times elapsed time
                 user system elapsed ratio
GRAB.NullModel 17.905  0.727   2.150 8.666
GRAB.POLMM     19.723  0.351   3.351 5.990
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 3 NOTEs