downloading reverse dependencies ...
downloading GeoModels_1.1.7.tar.gz ... ok
downloading VeccTMVN_1.0.0.tar.gz ... ok

installing dependencies ‘GoFKernel’, ‘GpGp’, ‘GPvecchia’, ‘sparseinv’

begin installing package ‘sparseinv’
begin installing package ‘GpGp’
begin installing package ‘GoFKernel’
* installing *source* package ‘GoFKernel’ ...
** package ‘GoFKernel’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GoFKernel)
* installing *source* package ‘sparseinv’ ...
** package ‘sparseinv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbtlXzs/R.INSTALL362ba016745ad1/sparseinv/src'
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_1.c -o amd_1.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_2.c -o amd_2.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_aat.c -o amd_aat.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_control.c -o amd_control.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_defaults.c -o amd_defaults.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_dump.c -o amd_dump.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_global.c -o amd_global.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_info.c -o amd_info.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_order.c -o amd_order.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_order_wrapper.c -o amd_order_wrapper.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_post_tree.c -o amd_post_tree.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_postorder.c -o amd_postorder.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_preprocess.c -o amd_preprocess.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c amd_valid.c -o amd_valid.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sparseinv-init.c -o sparseinv-init.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sparseinvRcpp.cpp -o sparseinvRcpp.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o sparseinv.so RcppExports.o amd_1.o amd_2.o amd_aat.o amd_control.o amd_defaults.o amd_dump.o amd_global.o amd_info.o amd_order.o amd_order_wrapper.o amd_post_tree.o amd_postorder.o amd_preprocess.o amd_valid.o sparseinv-init.o sparseinvRcpp.o -L/home/hornik/tmp/R/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbtlXzs/R.INSTALL362ba016745ad1/sparseinv/src'
installing to /home/hornik/tmp/CRAN/Library/00LOCK-sparseinv/00new/sparseinv/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sparseinv)
* installing *source* package ‘GpGp’ ...
** package ‘GpGp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXO45wg/R.INSTALL362ba417067a51/GpGp/src'
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c matrix_mult.cpp -o matrix_mult.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c vecchia_loglik_grad_info.cpp -o vecchia_loglik_grad_info.o
In file included from covmatrix_funs.h:9,
                 from onepass.h:8,
                 from vecchia_loglik_grad_info.cpp:8:
covmatrix_funs_01.h: In function ‘arma::cube d_exponential_isotropic(arma::vec, arma::mat)’:
covmatrix_funs_01.h:108:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  108 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_01.h: In function ‘arma::cube d_matern_isotropic(arma::vec, arma::mat)’:
covmatrix_funs_01.h:240:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  240 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_01.h: In function ‘arma::cube d_matern15_isotropic(arma::vec, arma::mat)’:
covmatrix_funs_01.h:341:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  341 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
In file included from covmatrix_funs.h:10:
covmatrix_funs_02.h: In function ‘arma::cube d_matern_anisotropic2D(arma::vec, arma::mat)’:
covmatrix_funs_02.h:144:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  144 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_02.h: In function ‘arma::cube d_matern_anisotropic3D(arma::vec, arma::mat)’:
covmatrix_funs_02.h:298:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  298 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_02.h: In function ‘arma::cube d_matern_anisotropic3D_alt(arma::vec, arma::mat)’:
covmatrix_funs_02.h:492:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  492 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_02.h: In function ‘arma::cube d_exponential_anisotropic2D(arma::vec, arma::mat)’:
covmatrix_funs_02.h:618:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  618 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_02.h: In function ‘arma::cube d_exponential_anisotropic3D(arma::vec, arma::mat)’:
covmatrix_funs_02.h:762:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  762 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_02.h:721:12: warning: unused variable ‘nugget’ [-Wunused-variable]
  721 |     double nugget = covparms( 0 )*covparms( 7 );
      |            ^~~~~~
covmatrix_funs_02.h: In function ‘arma::cube d_exponential_anisotropic3D_alt(arma::vec, arma::mat)’:
covmatrix_funs_02.h:939:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  939 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
In file included from covmatrix_funs.h:11:
covmatrix_funs_03.h: In function ‘arma::mat matern_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_03.h:41:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   41 |     if( covparms.n_elem - 3 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_03.h: In function ‘arma::cube d_matern_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_03.h:90:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   90 |     if( covparms.n_elem - 3 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_03.h:144:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  144 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_03.h:95:12: warning: unused variable ‘nugget’ [-Wunused-variable]
   95 |     double nugget = covparms( 0 )*covparms( dim + 2 );
      |            ^~~~~~
covmatrix_funs_03.h: In function ‘arma::mat exponential_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_03.h:179:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  179 |     if( covparms.n_elem - 2 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_03.h: In function ‘arma::cube d_exponential_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_03.h:224:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  224 |     if( covparms.n_elem - 2 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_03.h:267:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  267 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_03.h:229:12: warning: unused variable ‘nugget’ [-Wunused-variable]
  229 |     double nugget = covparms( 0 )*covparms( dim + 1 );
      |            ^~~~~~
covmatrix_funs_03.h: In function ‘arma::cube d_matern_spacetime(arma::vec, arma::mat)’:
covmatrix_funs_03.h:395:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  395 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_03.h:337:12: warning: unused variable ‘nugget’ [-Wunused-variable]
  337 |     double nugget = covparms( 0 )*covparms( 4 );
      |            ^~~~~~
covmatrix_funs_03.h: In function ‘arma::cube d_exponential_spacetime(arma::vec, arma::mat)’:
covmatrix_funs_03.h:507:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  507 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
In file included from covmatrix_funs.h:16:
covmatrix_funs_08.h: In function ‘arma::cube d_matern_nonstat_var(arma::vec, arma::mat)’:
covmatrix_funs_08.h:156:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  156 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_08.h: In function ‘arma::cube d_exponential_nonstat_var(arma::vec, arma::mat)’:
covmatrix_funs_08.h:295:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  295 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
In file included from covmatrix_funs.h:17:
covmatrix_funs_09.h: In function ‘arma::mat matern15_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_09.h:39:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   39 |     if( covparms.n_elem - 2 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_09.h: In function ‘arma::cube d_matern15_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_09.h:84:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   84 |     if( covparms.n_elem - 2 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_09.h:127:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  127 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_09.h:89:12: warning: unused variable ‘nugget’ [-Wunused-variable]
   89 |     double nugget = covparms( 0 )*covparms( dim + 1 );
      |            ^~~~~~
In file included from covmatrix_funs.h:18:
covmatrix_funs_10.h: In function ‘arma::cube d_matern25_isotropic(arma::vec, arma::mat)’:
covmatrix_funs_10.h:102:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  102 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_10.h: In function ‘arma::mat matern25_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_10.h:137:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  137 |     if( covparms.n_elem - 2 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_10.h: In function ‘arma::cube d_matern25_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_10.h:182:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  182 |     if( covparms.n_elem - 2 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_10.h:226:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  226 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_10.h:187:12: warning: unused variable ‘nugget’ [-Wunused-variable]
  187 |     double nugget = covparms( 0 )*covparms( dim + 1 );
      |            ^~~~~~
In file included from covmatrix_funs.h:19:
covmatrix_funs_11.h: In function ‘arma::cube d_matern35_isotropic(arma::vec, arma::mat)’:
covmatrix_funs_11.h:116:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  116 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_11.h: In function ‘arma::mat matern35_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_11.h:151:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  151 |     if( covparms.n_elem - 2 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_11.h: In function ‘arma::cube d_matern35_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_11.h:201:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  201 |     if( covparms.n_elem - 2 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_11.h:251:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  251 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_11.h:206:12: warning: unused variable ‘nugget’ [-Wunused-variable]
  206 |     double nugget = covparms( 0 )*covparms( dim + 1 );
      |            ^~~~~~
In file included from covmatrix_funs.h:20:
covmatrix_funs_12.h: In function ‘arma::cube d_matern45_isotropic(arma::vec, arma::mat)’:
covmatrix_funs_12.h:118:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  118 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_12.h: In function ‘arma::mat matern45_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_12.h:153:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  153 |     if( covparms.n_elem - 2 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_12.h: In function ‘arma::cube d_matern45_scaledim(arma::vec, arma::mat)’:
covmatrix_funs_12.h:204:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  204 |     if( covparms.n_elem - 2 != dim ){
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~
covmatrix_funs_12.h:255:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  255 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_12.h:209:12: warning: unused variable ‘nugget’ [-Wunused-variable]
  209 |     double nugget = covparms( 0 )*covparms( dim + 1 );
      |            ^~~~~~
In file included from covmatrix_funs.h:21:
covmatrix_funs_13.h: In function ‘arma::cube d_matern_categorical(arma::vec, arma::mat)’:
covmatrix_funs_13.h:177:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  177 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_13.h:126:12: warning: unused variable ‘nugget’ [-Wunused-variable]
  126 |     double nugget = covparms( 0 )*covparms( 4 );
      |            ^~~~~~
covmatrix_funs_13.h:127:16: warning: unused variable ‘categ’ [-Wunused-variable]
  127 |         double categ = covparms(0)*covparms(3);
      |                ^~~~~
covmatrix_funs_13.h: In function ‘arma::cube d_matern_spacetime_categorical(arma::vec, arma::mat)’:
covmatrix_funs_13.h:373:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  373 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_13.h: In function ‘arma::cube d_matern_spacetime_categorical_local(arma::vec, arma::mat)’:
covmatrix_funs_13.h:661:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  661 |             for(int j=0; j<covparms.n_elem; j++){
      |                          ~^~~~~~~~~~~~~~~~
covmatrix_funs_13.h:542:12: warning: unused variable ‘nugget’ [-Wunused-variable]
  542 |     double nugget = covparms(0)*covparms(8);
      |            ^~~~~~
onepass.h: In function ‘arma::mat mychol(arma::mat)’:
onepass.h:93:10: warning: variable ‘pd’ set but not used [-Wunused-but-set-variable]
   93 |     bool pd = true;
      |          ^~
onepass.h: In function ‘void synthesize_grouped(Rcpp::NumericVector, Rcpp::StringVector, Rcpp::NumericMatrix, Rcpp::List, Rcpp::NumericVector&, Rcpp::NumericMatrix, Rcpp::NumericVector*, Rcpp::NumericVector*, Rcpp::NumericVector*, Rcpp::NumericMatrix*, Rcpp::NumericMatrix*, bool, bool)’:
onepass.h:700:9: warning: unused variable ‘dim’ [-Wunused-variable]
  700 |     int dim = locs.ncol();
      |         ^~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o GpGp.so RcppExports.o matrix_mult.o vecchia_loglik_grad_info.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXO45wg/R.INSTALL362ba417067a51/GpGp/src'
installing to /home/hornik/tmp/CRAN/Library/00LOCK-GpGp/00new/GpGp/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GpGp)
begin installing package ‘GPvecchia’
* installing *source* package ‘GPvecchia’ ...
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpodkYCf/R.INSTALL362c9c2ecb6994/GPvecchia/src'
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Esqe.cpp -o Esqe.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Matern.cpp -o Matern.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MaxMin.cpp -o MaxMin.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c U_NZentries.cpp -o U_NZentries.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c dist.cpp -o dist.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fastTree.cpp -o fastTree.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c getMatCovFromFactor.cpp -o getMatCovFromFactor.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ic0.cpp -o ic0.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o GPvecchia.so Esqe.o Matern.o MaxMin.o RcppExports.o U_NZentries.o dist.o fastTree.o getMatCovFromFactor.o ic0.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpodkYCf/R.INSTALL362c9c2ecb6994/GPvecchia/src'
installing to /home/hornik/tmp/CRAN/Library/00LOCK-GPvecchia/00new/GPvecchia/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GPvecchia)

checking GPvecchia_0.1.7.tar.gz ...
checking GeoModels_1.1.7.tar.gz ...
checking VeccTMVN_1.0.0.tar.gz ...

Depends:
Package: GPvecchia
  Imports: Rcpp (>= 1.0.9), methods, stats, sparseinv, fields,
    Matrix(>= 1.5.1), parallel, GpGp, FNN
  LinkingTo: Rcpp, RcppArmadillo, BH

Timings:
             user system elapsed
GPvecchia 128.145  8.559 104.045

Results:
Check status summary:
                  NOTE OK
  Source packages    1  0
  Reverse depends    0  2

Check results summary:
GPvecchia ... NOTE
* checking re-building of vignette outputs ... [37s/5s] NOTE
rdepends_GeoModels ... OK
rdepends_VeccTMVN ... OK