* installing *source* package ‘GPvecchia’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 17.0.6 (3)’
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c Esqe.cpp -o Esqe.o
In file included from Esqe.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo:26:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
3 warnings generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c Matern.cpp -o Matern.o
In file included from Matern.cpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo:26:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
3 warnings generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c MaxMin.cpp -o MaxMin.o
MaxMin.cpp:131:2: warning: '/*' within block comment [-Wcomment]
  131 | }/*
      |  ^
MaxMin.cpp:133:1: warning: '/*' within block comment [-Wcomment]
  133 | /*Function that performs a single step of heap reordering. The output is -1, if no
      | ^
2 warnings generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c U_NZentries.cpp -o U_NZentries.o
In file included from U_NZentries.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo:26:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
3 warnings generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c dist.cpp -o dist.o
In file included from dist.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo:26:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
3 warnings generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c fastTree.cpp -o fastTree.o
In file included from fastTree.cpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo:26:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
3 warnings generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c getMatCovFromFactor.cpp -o getMatCovFromFactor.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c ic0.cpp -o ic0.o
In file included from ic0.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo:26:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |             ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  329 |   #pragma message ("INFO: see the documentation for details")
      |           ^
3 warnings generated.
clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o GPvecchia.so Esqe.o Matern.o MaxMin.o RcppExports.o U_NZentries.o dist.o fastTree.o getMatCovFromFactor.o ic0.o -fopenmp -llapack -L/home/hornik/tmp/R-d-clang-17/lib -lRblas -L/usr/lib/llvm-17/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-17/lib -lR
installing to /srv/hornik/tmp/CRAN/GPvecchia.Rcheck/00LOCK-GPvecchia/00new/GPvecchia/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GPvecchia)