* using log directory 'd:/RCompile/CRANincoming/R-devel/GOxploreR.Rcheck'
* using R Under development (unstable) (2023-11-01 r85459 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'GOxploreR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GOxploreR' version '0.1.2'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... WARNING
Maintainer: 'Kalifa Manjang <kalifamanjang1@gmail.com>'

Insufficient package version (submitted: 0.1.2, existing: 1.2.6)

Possibly misspelled words in DESCRIPTION:
  GOxploreR (7:18)
  knowleadgebase (3:48)

The Title field should be in title case. Current version is:
'Structural exploration of Gene Ontology knowleadgebase'
In title case that is:
'Structural Exploration of Gene Ontology Knowleadgebase'

Size of tarball: 6068339 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'GOxploreR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [36s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'GOTermCCOnLevel.Rd':
  \examples lines wider than 100 characters:
     goterms <- c("GO:0005634","GO:0005737","GO:0016020","GO:0005743","GO:0005739","GO:0005759","GO:0005829")

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
Documented arguments not in \usage in Rd file 'maxLevelBP.Rd':
  'org'

Documented arguments not in \usage in Rd file 'maxLevelCC.Rd':
  'org'

Documented arguments not in \usage in Rd file 'maxLevelMF.Rd':
  'org'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking LazyData ... NOTE
  'LazyData' is specified without a 'data' directory
* checking R/sysdata.rda ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [10s] ERROR
Running examples in 'GOxploreR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GOTermBPOnLevel
> ### Title: GO biological process (BP) terms level getter
> ### Aliases: GOTermBPOnLevel
> 
> ### ** Examples
> 
> # A vector of biological process GO terms
> goterms <- c("GO:0006805","GO:0009083","GO:0006631","GO:0006629")
> 
> GOTermBPOnLevel(goterms)
        Term Level
1 GO:0006805     5
2 GO:0009083     8
3 GO:0006631     7
4 GO:0006629     3
> 
> GOTermBPOnLevel("GO:0055114")
Error in GOTermBPOnLevel("GO:0055114") : 
  Check that the term on index 1 are bp GO-terms and not obsolete
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [17s] ERROR
Error(s) in re-building vignettes:
--- re-building 'GOxploreR.Rmd' using rmarkdown

Quitting from lines 271-279 [unnamed-chunk-14] (GOxploreR.Rmd)
Error: processing vignette 'GOxploreR.Rmd' failed with diagnostics:
Check that the term on index 35 87 88 114 192 256 390 447 479 523 570 586 670 751 798 799 825 826 865 866 867 868 869 870 871 915 920 945 946 959 981 1005 1039 1074 1094 1315 1325 1326 1327 1344 1375 1385 1410 1513 1557 1601 1608 1636 1702 1710 1871 1890 2097 2128 2129 2130 2131 2153 2161 2213 2222 2248 2300 2325 2393 2461 2611 2641 2750 2758 2777 2783 2807 2810 2818 2834 2846 2860 2888 2894 2901 2902 2915 2923 2930 3002 3044 3112 3132 are mf GO-terms and not obsolete
--- failed re-building 'GOxploreR.Rmd'

SUMMARY: processing the following file failed:
  'GOxploreR.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs, 1 WARNING, 3 NOTEs